View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_25 (Length: 281)
Name: NF20027_low_25
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 21489927 - 21490180
Alignment:
| Q |
18 |
agtactttataaccctaattcattgcataatagaaaaattacaacagtcactctgctgtcaaaacgtagacataaccggctgaactccgcgaacaatcgt |
117 |
Q |
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| T |
21489927 |
agtactttataaccctaattcattgcataatagaaaaattacaatagtcactctgctgtcaaaacgtagacataaccggctgaactccgcgaacaatcgt |
21490026 |
T |
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| Q |
118 |
tgctttcttgtgtgtttattttatttactttagaaccggattcgctaactccaaacaaacaaaaattacgcctcatttatagttattaaacttattatat |
217 |
Q |
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| T |
21490027 |
tgctttcttgtgcgtttattttatttactttagaaccggattcgctaactccaaacaaacaaaaactacacctcatttatagttattaaacttattatgt |
21490126 |
T |
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| Q |
218 |
tctcaatatgttctaactatannnnnnnngttctttattgaagcttgtcctttg |
271 |
Q |
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| T |
21490127 |
tctcaatatgttctaactatattttttttgttctttattgaagcttgtcctttg |
21490180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 13268413 - 13268377
Alignment:
| Q |
38 |
cattgcataatagaaaaattacaacagtcactctgct |
74 |
Q |
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| T |
13268413 |
cattgcataatagaaaaattaaaacagtcactctgct |
13268377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 10246658 - 10246720
Alignment:
| Q |
27 |
taaccctaattcattgcataatagaaaaattacaacagtcactctgctgtcaaa-acgtagaca |
89 |
Q |
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| T |
10246658 |
taaccctaattcattgcataatag-aaaattacatcaatcactttgttgtcaaagacgtagaca |
10246720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 2147183 - 2147234
Alignment:
| Q |
25 |
tataaccctaattcattgcataatagaaaaattacaacagtcactctgctgtc |
77 |
Q |
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| T |
2147183 |
tataaccctaag-cattgcatagtagaaaaattacaacattcactctgatgtc |
2147234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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