View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20027_low_32 (Length: 235)

Name: NF20027_low_32
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20027_low_32
NF20027_low_32
[»] scaffold0135 (1 HSPs)
scaffold0135 (11-220)||(31132-31341)
[»] chr4 (5 HSPs)
chr4 (11-220)||(9220481-9220690)
chr4 (105-220)||(9269160-9269275)
chr4 (105-220)||(9251373-9251488)
chr4 (77-220)||(9251100-9251240)
chr4 (21-194)||(9197715-9197892)
[»] scaffold0959 (1 HSPs)
scaffold0959 (75-220)||(485-630)
[»] chr3 (6 HSPs)
chr3 (13-191)||(15855987-15856171)
chr3 (15-220)||(12793983-12794202)
chr3 (130-173)||(8898146-8898189)
chr3 (132-220)||(15957151-15957238)
chr3 (130-167)||(15046537-15046574)
chr3 (113-174)||(17218313-17218374)
[»] chr5 (5 HSPs)
chr5 (76-220)||(10178133-10178279)
chr5 (16-173)||(17362840-17363000)
chr5 (133-173)||(22950540-22950580)
chr5 (113-174)||(22447446-22447506)
chr5 (132-183)||(24192786-24192838)
[»] chr8 (1 HSPs)
chr8 (76-220)||(24969378-24969524)
[»] chr2 (5 HSPs)
chr2 (65-220)||(17739718-17739874)
chr2 (113-174)||(18928929-18928990)
chr2 (134-173)||(43938369-43938408)
chr2 (108-220)||(24301698-24301812)
chr2 (136-173)||(34898120-34898157)
[»] scaffold1826 (1 HSPs)
scaffold1826 (89-194)||(1168-1273)
[»] chr6 (6 HSPs)
chr6 (105-174)||(12485140-12485209)
chr6 (136-220)||(9520470-9520555)
chr6 (13-133)||(19978152-19978279)
chr6 (117-173)||(14797125-14797182)
chr6 (133-173)||(17821298-17821338)
chr6 (130-173)||(17913158-17913201)
[»] scaffold0111 (1 HSPs)
scaffold0111 (113-173)||(31561-31621)
[»] chr7 (3 HSPs)
chr7 (96-167)||(17162519-17162590)
chr7 (129-192)||(20147374-20147438)
chr7 (132-168)||(8250716-8250752)
[»] scaffold0417 (1 HSPs)
scaffold0417 (113-166)||(2371-2424)
[»] chr1 (3 HSPs)
chr1 (113-174)||(9167548-9167609)
chr1 (113-168)||(20406839-20406894)
chr1 (132-173)||(30822094-30822135)
[»] scaffold0190 (1 HSPs)
scaffold0190 (94-220)||(731-859)
[»] scaffold2073 (1 HSPs)
scaffold2073 (113-156)||(556-599)
[»] scaffold0053 (1 HSPs)
scaffold0053 (130-173)||(76253-76296)


Alignment Details
Target: scaffold0135 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 31132 - 31341
Alignment:
Q  11 catcatcaaggtcgtcccctcaagatacaaatgtatcatagtcgtcatcatttgaacgtattcaagtcgtcttcgctggatataatatcatagccgtctt 110  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31132 catcatcaaggtcgtcacctcaaaatacaaatgtatcatagtcatcatcatttgaacgtattcaagtcgtcttcgttggatataatatcatagccgtctt 31231  T
Q  111 cattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcattttcttcttaatttttcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31232 cattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcattttcttcttaatttttcat 31331  T
Q  211 acatgcattc 220  Q
    ||||||||||    
T  31332 acatgcattc 31341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 9220481 - 9220690
Alignment:
Q  11 catcatcaaggtcgtcccctcaagatacaaatgtatcatagtcgtcatcatttgaacgtattcaagtcgtcttcgctggatataatatcatagccgtctt 110  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9220481 catcatcaaggtcgtcacctcaaaatacaaatgtatcatagtcatcatcatttgaacgtattcaagtcgtcttcgttggatataatatcatagccgtctt 9220580  T
Q  111 cattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcattttcttcttaatttttcat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9220581 cattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcattttcttcttaatttttcat 9220680  T
Q  211 acatgcattc 220  Q
    ||||||||||    
T  9220681 acatgcattc 9220690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 9269160 - 9269275
Alignment:
Q  105 cgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcattttcttcttaatt 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||  |||| || ||||| ||||||||||| |||| |||    
T  9269160 cgtcttcattggatataaatatcctacttatgaatgcatgaacatacgactccacaatgcatacgctcaacaaaaaatcgtcatcattttcgtcttcatt 9269259  T
Q  205 tttcatacatgcattc 220  Q
    ||||||||||||||||    
T  9269260 tttcatacatgcattc 9269275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 9251373 - 9251488
Alignment:
Q  105 cgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcattttcttcttaatt 204  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||  |||| || ||||| | ||||||||| |||| |||    
T  9251373 cgtcttcattggatataaatatcttacttatgaatgcatgaatatacgactcaacaatgcatacgctcaagaaaaaatcgtgatcattttcgtcttgatt 9251472  T
Q  205 tttcatacatgcattc 220  Q
    ||||||||||||||||    
T  9251473 tttcatacatgcattc 9251488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 9251100 - 9251240
Alignment:
Q  77 tcgtcttcgctggatataatatcatagccgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaata 176  Q
    |||||||||  ||||||||| || ||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||  |||| |    
T  9251100 tcgtcttcgtcggatataatgtcctagtcatcttcattggatataaatatcctacttatgaatgcatgaacatacgaatcaacaatgcacacgctcaaca 9251199  T
Q  177 acaaatcctcatcattttcttcttaatttttcatacatgcattc 220  Q
    | ||||| ||||||||||||||   |||||||||| ||||||||    
T  9251200 aaaaatcgtcatcattttcttc---atttttcataaatgcattc 9251240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 9197715 - 9197892
Alignment:
Q  21 gtcgtcccctcaagatacaaatgtatcatagtcgtcatcatttgaac-----gtattcaagtcgtcttcgctggatataatatcatagccgtcttcattg 115  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||      |||||   |||||||||| ||||||||| |||  || |||||| ||||    
T  9197715 gtcgtcacctcaagatacaaatgtatcatagtcgttatcatttgaatacaaagtattatggtcgtcttcgttggatataacatcccagtcgtctttattg 9197814  T
Q  116 gatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcatttt 194  Q
    | |||||||||| ||||||| ||||||||| |||||||||| |||||| |||| ||||| | |||||  ||||||||||    
T  9197815 ggtataaatatcctacttataaatgcatga-catacgactcgacaatgtatacgttcaacaccaaattatcatcatttt 9197892  T

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Target: scaffold0959 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 485 - 630
Alignment:
Q  75 agtcgtcttcgctggatataatatcatagccgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaa 174  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||    
T  485 agtcgtcttcgttggatataatatcctagtcgtcttcattggatataaatatcatacttatgaatgcatgaatataagactcaacaatgcataagttcaa 584  T
Q  175 taacaaatcctcatcattttcttcttaatttttcatacatgcattc 220  Q
     || ||||| ||||||||| | |||| |||||||||||||||||||    
T  585 caataaatcgtcatcatttacgtcttcatttttcatacatgcattc 630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 15855987 - 15856171
Alignment:
Q  13 tcatcaaggtcgtcccctcaagatacaaatgtatcatagtcgtcatcatttgaacg-----tattcaagtcgtcttcgctggatataa-tatcatagccg 106  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||       ||||| ||||||||| | || |||||| |||| ||| ||    
T  15855987 tcatcaaggtcgtcacctcaagatacaaatgtatcatagtcgtcgtcatttgaatacaaattattctagtcgtctttgttgaatataaatatcctagtcg 15856086  T
Q  107 tcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcat 191  Q
    ||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||||||||| |||||||  |||||||    
T  15856087 tcttcattggatataaatatcctacttacgaatgcatgaacatataactcaacaatgcatacattcaacaacaaattgtcatcat 15856171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 12793983 - 12794202
Alignment:
Q  15 atcaaggtcgtcccctcaagatacaaatgtatcatagtcgtcatcatttg------aacgtattcaagtcgtcttcgctggatataa-tatcatagccgt 107  Q
    |||||||||||| ||||||||||||||||||||||| ||||| || |||       || |||||| ||| ||||||  ||||||||| |||| ||| |||    
T  12793983 atcaaggtcgtcacctcaagatacaaatgtatcatattcgtcgtccttttgaatataaagtattcgagttgtcttcagtggatataaatatcctagtcgt 12794082  T
Q  108 cttcattggatataaatatcatactt-------atgaatgcatgaacatacgactcaacaatgcatacattcaataacaaa-tcctcatcattttcttct 199  Q
     ||||||||||||||| ||| |||||       |||  |||||||||||| |||||||||||||| |  ||||| |||||| || ||||||||||| | |    
T  12794083 attcattggatataaacatcctacttgacacttatgt-tgcatgaacatatgactcaacaatgcacatgttcaacaacaaaatcgtcatcattttcgtat 12794181  T
Q  200 taatttttcatacatgcattc 220  Q
    | |||||||||||||||||||    
T  12794182 tcatttttcatacatgcattc 12794202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 8898146 - 8898189
Alignment:
Q  130 acttatgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  8898146 acttatgaatgcatgaacatatgactcaacaatgcatacattca 8898189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 15957151 - 15957238
Alignment:
Q  132 ttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcatcattttcttcttaatttttcatacatgcattc 220  Q
    ||||||||||||||||||| || ||||||||||||   ||||| ||||||||  |||||||||| |||| | |||||||||||| ||||    
T  15957151 ttatgaatgcatgaacatatgaatcaacaatgcatgtgttcaacaacaaatcgccatcattttcatcttca-ttttcatacatgtattc 15957238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 15046574 - 15046537
Alignment:
Q  130 acttatgaatgcatgaacatacgactcaacaatgcata 167  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  15046574 acttatgaatgcatgaacatatgactcaacaatgcata 15046537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 17218313 - 17218374
Alignment:
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaa 174  Q
    |||||||| |||||| ||||||||||| |||||| ||| ||||||| ||||||||| |||||    
T  17218313 ttggatatgaatatcctacttatgaattcatgaatatatgactcaataatgcatacgttcaa 17218374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 10178279 - 10178133
Alignment:
Q  76 gtcgtcttcgctggatataa-tatcatagccgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaa 174  Q
    |||||||||| ||||| ||| |||| ||| |||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  10178279 gtcgtcttcgttggatttaaatatcctagtcgtcttcattagatataaatatcctacttatgaatgcatgaacatatgactcaacaatgcatacgttcaa 10178180  T
Q  175 ta-acaaatcctcatcattttcttcttaatttttcatacatgcattc 220  Q
     | |||| || ||||||||||| |||| |||||| ||||||||||||    
T  10178179 catacaattcgtcatcattttcgtcttcattttttatacatgcattc 10178133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 17362840 - 17363000
Alignment:
Q  16 tcaaggtcgtcccctcaagatacaaatgtatcatagtc--gtcatcatttgaacgtattcaagtcgtcttcgctggatataat-atcatagccgtcttca 112  Q
    ||||||||||| ||||||||||||||||||||||| ||  ||| | | |  || |||||| |||| || ||| ||||| |||  ||  ||| | ||||||    
T  17362840 tcaaggtcgtcacctcaagatacaaatgtatcataatcatgtcgttaatacaaagtattctagtcatcgtcgttggatgtaaacattctagtcatcttca 17362939  T
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
     |||||||||||||| ||||||| |||||||||||||| | ||||| ||||||||| ||||    
T  17362940 ctggatataaatatcttacttatcaatgcatgaacatatggctcaataatgcatacgttca 17363000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 22950540 - 22950580
Alignment:
Q  133 tatgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  22950540 tatgaatgcatgaacatatgactcaacaatgcatacgttca 22950580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 22447446 - 22447506
Alignment:
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaa 174  Q
    ||||||||||| ||| ||||||||||| |||||||||| ||||||| || |||||| |||||    
T  22447446 ttggatataaa-atcctacttatgaatacatgaacatatgactcaataaggcatacgttcaa 22447506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 24192786 - 24192838
Alignment:
Q  132 ttatgaatgcatgaacatacgactcaa-caatgcatacattcaataacaaatc 183  Q
    ||||||||||||||||||| ||||||| |||||||||  ||||| ||||||||    
T  24192786 ttatgaatgcatgaacatatgactcaatcaatgcatatgttcaacaacaaatc 24192838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 24969378 - 24969524
Alignment:
Q  76 gtcgtcttcgctggatataa-tatcatagccgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaa 174  Q
    |||||||||| ||||||||| ||||  || |  ||||||| |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||    
T  24969378 gtcgtcttcgttggatataaatatctcagtcaacttcattcgatataaatatcctacttatgaatgcatgaacatatgactcaataatgcatacgttcaa 24969477  T
Q  175 -taacaaatcctcatcattttcttcttaatttttcatacatgcattc 220  Q
      |||||||| || |||||||| |||| |||||||||||||||||||    
T  24969478 caaacaaatcgtcgtcattttcgtcttcatttttcatacatgcattc 24969524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 17739718 - 17739874
Alignment:
Q  65 aacgtattcaagtcgtcttcgctggatataa-tatcatagccgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatg 163  Q
    |||||||||  ||| |||||| ||||||||| || | ||| ||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||||| |    
T  17739718 aacgtattctggtcatcttcgttggatataaataacctagtcgtcttcattgaatataaatattttacttattaatgcatgaacatatgactcaacaacg 17739817  T
Q  164 catacattcaataacaaatcctcatcattttcttcttaatttttcatacatgcattc 220  Q
    ||||| ||||| |||| ||  ||||||||||| |||| |||| ||||||| ||||||    
T  17739818 catacgttcaacaacatatagtcatcattttcgtcttcatttctcatacaagcattc 17739874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 18928929 - 18928990
Alignment:
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaa 174  Q
    ||||||||||||||  ||||||||||||||| |||||| ||||||| ||||||||| |||||    
T  18928929 ttggatataaatattctacttatgaatgcataaacatatgactcaataatgcatacgttcaa 18928990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 43938369 - 43938408
Alignment:
Q  134 atgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  43938369 atgaatgcatgaacatatgactcatcaatgcatacattca 43938408  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 24301698 - 24301812
Alignment:
Q  108 cttcattggatataaatatc---atacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaa-tcctcatcattttcttcttaat 203  Q
    ||||||||||||||||||||   | ||||||| ||||||||||||| ||||| || ||||| |  |||||||||||| || |||||||||||  ||  ||    
T  24301698 cttcattggatataaatatcctaaaacttatg-atgcatgaacatatgactc-actatgcacatgttcaataacaaattcgtcatcattttcacctctat 24301795  T
Q  204 ttttcatacatgcattc 220  Q
    ||| |||||||||||||    
T  24301796 tttgcatacatgcattc 24301812  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 34898157 - 34898120
Alignment:
Q  136 gaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  34898157 gaatgcatgaacatatgactcaacaatgcatacgttca 34898120  T

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Target: scaffold1826 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 1168 - 1273
Alignment:
Q  89 gatataatatcatagccgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaatcctcat 188  Q
    ||||||||||| ||| |||||||||||||| |||||||| |||||||||||  ||||||||| |||||||||||||||||  |||| || ||||| ||||    
T  1168 gatataatatcctagtcgtcttcattggatgtaaatatcctacttatgaatatatgaacatatgactcaacaatgcatacgctcaacaaaaaatcgtcat 1267  T
Q  189 catttt 194  Q
    ||||||    
T  1268 catttt 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 12485140 - 12485209
Alignment:
Q  105 cgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  12485140 cgtcttcattggatataaatatcatacttatgaatgcatgaacctatgactcaacaatacatacattcaa 12485209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 9520470 - 9520555
Alignment:
Q  136 gaatgcatgaacatacgactcaacaatgcatacattcaataa-caaatcctcatcattttcttcttaatttttcatacatgcattc 220  Q
    ||||||||||||||| ||||| |||| |||||| ||||| || |||||| || |||||||| |||| |||||||||||||||||||    
T  9520470 gaatgcatgaacatatgactcgacaacgcatacgttcaacaaacaaatcatcgtcattttcgtcttcatttttcatacatgcattc 9520555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 19978279 - 19978152
Alignment:
Q  13 tcatcaaggtcgtcccctcaagatacaaatgtatcatagtcgtcatcattt------gaacgtattcaagtcgtcttcgctggatat-aatatcatagcc 105  Q
    |||||||||||| | ||||||||||||||||||||||||||||| || |||       || | ||||  ||| |||||| ||||||| |||||| ||| |    
T  19978279 tcatcaaggtcgccacctcaagatacaaatgtatcatagtcgtcgtcgttttgaataaaaagcattcgggtcttcttcgttggatataaatatcctagtc 19978180  T
Q  106 gtcttcattggatataaatatcatactt 133  Q
    |||||||||||||||||||||| |||||    
T  19978179 gtcttcattggatataaatatcctactt 19978152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 14797125 - 14797182
Alignment:
Q  117 atataaatatcatactt-atgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||    
T  14797125 atataaatatcatactttatgaatgcatgaacatatgactcaataatgcatacgttca 14797182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 17821338 - 17821298
Alignment:
Q  133 tatgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  17821338 tatgaatgcatgaacatatgactcaacaatgcatacgttca 17821298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 17913158 - 17913201
Alignment:
Q  130 acttatgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||    
T  17913158 acttatgaatgcatgaacatatgactcgacaatgcatacgttca 17913201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 31621 - 31561
Alignment:
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||||    
T  31621 ttggatataaatatcctacttatgaatgcatgaacatatgactcaataatgcatacgttca 31561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 17162590 - 17162519
Alignment:
Q  96 tatcatagccgtcttcattggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcata 167  Q
    |||||||  ||||||||||||||||||||||  ||||||||||||||||| |||| ||||||| ||||||||    
T  17162590 tatcataatcgtcttcattggatataaatattctacttatgaatgcatgagcatatgactcaataatgcata 17162519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 20147374 - 20147438
Alignment:
Q  129 tacttatgaatgcatgaacatacgactcaacaatgcatacattcaat-aacaaatcctcatcatt 192  Q
    |||||||||||||||||||||| ||||||| |||| |||| |||| | |||||||| ||||||||    
T  20147374 tacttatgaatgcatgaacataagactcaataatgtatacgttcattcaacaaatcgtcatcatt 20147438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 8250716 - 8250752
Alignment:
Q  132 ttatgaatgcatgaacatacgactcaacaatgcatac 168  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  8250716 ttatgaatgcatgaacatatgactcaacaatacatac 8250752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 2371 - 2424
Alignment:
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcat 166  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||    
T  2371 ttggatataaatatcctacttatgaatacatgaacatatgactcaataatgcat 2424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 9167609 - 9167548
Alignment:
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatacattcaa 174  Q
    |||||||| |||||| |||||||||||||||||||||| || |||| |||||| || |||||    
T  9167609 ttggatattaatatcctacttatgaatgcatgaacatatgattcaataatgcaaacgttcaa 9167548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 20406839 - 20406894
Alignment:
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactcaacaatgcatac 168  Q
    ||||| ||||||||| ||||||||||| | |||||||| ||||||| |||||||||    
T  20406839 ttggaaataaatatcctacttatgaatacttgaacatatgactcaataatgcatac 20406894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 30822094 - 30822135
Alignment:
Q  132 ttatgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  30822094 ttatgaatgcatgaacatatgactcaataatgcatacgttca 30822135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 731 - 859
Alignment:
Q  94 aatatcatagccgtcttcattggatataaatatcat---acttatgaatgcatgaacatacgactcaacaatgcatacattcaataacaaa-tcctcatc 189  Q
    |||||| ||| | |||||||||||||||||||||||   ||||||| ||||||||||||| ||||| || ||||| |  ||||| |||||| || | |||    
T  731 aatatcctagtcatcttcattggatataaatatcataaaacttatg-atgcatgaacatatgactc-actatgcacatgttcaacaacaaattcattatc 828  T
Q  190 attttcttcttaatttttcatacatgcattc 220  Q
    ||||||  ||| ||||| |||||||||||||    
T  829 attttcaccttcattttgcatacatgcattc 859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 556 - 599
Alignment:
Q  113 ttggatataaatatcatacttatgaatgcatgaacatacgactc 156  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||    
T  556 ttggatagaaatatcctacttatgaatgcatgaacatatgactc 599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 76296 - 76253
Alignment:
Q  130 acttatgaatgcatgaacatacgactcaacaatgcatacattca 173  Q
    ||||||||||||||||||||| || |||||||||||||| ||||    
T  76296 acttatgaatgcatgaacatatgaatcaacaatgcatacgttca 76253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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