View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_33 (Length: 228)
Name: NF20027_low_33
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 18138172 - 18138004
Alignment:
| Q |
1 |
attaaagaaaagagatgaaaccaaaatttaacaataacttaaaggacaaaaatgtaatttaaccaatataaaattacttaactttnnnnnnntcaaaact |
100 |
Q |
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| T |
18138172 |
attaaagaaaagagatgaaaccaaaatttaacaataacttaaaggacaaaaatgtagtttaaccaatataaaattacttaactttaaaaaaatcaaaaca |
18138073 |
T |
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| Q |
101 |
annnnnnnnnnctaaaaagtatttgaagtgacccctttaagaatattatttttggctctcgtgatcgac |
169 |
Q |
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| T |
18138072 |
tttttttttttttttaaagtatataaagtgacccctttaagaatattatttctggctctcgtgatcgac |
18138004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 18105133 - 18105075
Alignment:
| Q |
30 |
aacaataacttaaaggacaaaaatg---taatttaaccaatataaaattacttaacttt |
85 |
Q |
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| T |
18105133 |
aacaataacttaaaggacaaaaattaattaatttaaccaatataaaattacttaacttt |
18105075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 31557192 - 31557133
Alignment:
| Q |
24 |
aaatttaacaataacttaaaggacaaaaatgtaatttaaccaatataaaattacttaact |
83 |
Q |
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| T |
31557192 |
aaatttaacaataacttaaaggacaaaaaaattatttaacgtatattaaattacttaact |
31557133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 13526249 - 13526286
Alignment:
| Q |
48 |
aaaaatgtaatttaaccaatataaaattacttaacttt |
85 |
Q |
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|||||| |||||||||| |||||||||||||||||||| |
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| T |
13526249 |
aaaaatataatttaacctatataaaattacttaacttt |
13526286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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