View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_34 (Length: 209)
Name: NF20027_low_34
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 3827300 - 3827143
Alignment:
| Q |
10 |
agataatacttcattctaagttaagctaaacttttgtattttcaagagaaattttttactaagagatttcttaaccaatgcttttaggataaagattagc |
109 |
Q |
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| T |
3827300 |
agataacacttcattctaagttaagctaaacttttgtattttcaagagaaaatttttactaagagatttcttaaccaatgctttta-gataaagattagc |
3827202 |
T |
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| Q |
110 |
caaaatccattattatcataatgcttcaaataattttaattaaatgtaacatcaatttt |
168 |
Q |
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| T |
3827201 |
caaaatccattattatcataatgtttcaaataattttaattaaatgtaacatcaatttt |
3827143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 3864847 - 3864690
Alignment:
| Q |
10 |
agataatacttcattctaagttaagctaaacttttgtattttcaagagaaattttttactaagagatttcttaaccaatgcttttaggataaagattagc |
109 |
Q |
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| T |
3864847 |
agataacacttcattctaagttaagttaaacttttgtatttctaagagaacgtttttattaatagatttcctaaccaatgcttttaggataatggttag- |
3864749 |
T |
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| Q |
110 |
caaaatccattattatcataatgcttcaaataattttaattaaatgtaacatcaatttt |
168 |
Q |
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| T |
3864748 |
caaaatccattattatgataatgtatcaaataattttaattaaatgtaacatcaatttt |
3864690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 3822872 - 3822732
Alignment:
| Q |
30 |
ttaagctaaacttttgtattttcaagagaaattttttactaagagatttcttaaccaatgcttttaggataaagattagccaaaatccattatta----t |
125 |
Q |
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| T |
3822872 |
ttaagcaaaacttttgaatttccaagagaaagtttttactgatgaattttttaaaaaatgcttttaggataatggttagc-aaaatccagtattaaatat |
3822774 |
T |
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| Q |
126 |
cataatgcttcaaataattttaattaaatgtaacatcaattt |
167 |
Q |
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|||||| || ||||||||| ||||||||||| |||||||| |
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| T |
3822773 |
cataatattttaaataatttcaattaaatgtataatcaattt |
3822732 |
T |
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