View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20027_low_4 (Length: 492)

Name: NF20027_low_4
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20027_low_4
NF20027_low_4
[»] chr6 (9 HSPs)
chr6 (13-474)||(20505562-20506011)
chr6 (337-475)||(20475757-20475895)
chr6 (307-427)||(20517633-20517759)
chr6 (305-465)||(20493582-20493742)
chr6 (391-455)||(2917028-2917092)
chr6 (391-455)||(2930616-2930680)
chr6 (401-452)||(6869512-6869563)
chr6 (337-455)||(24555007-24555125)
chr6 (115-151)||(20476090-20476126)
[»] chr1 (2 HSPs)
chr1 (320-436)||(13072234-13072350)
chr1 (195-289)||(13072097-13072191)


Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 474
Target Start/End: Complemental strand, 20506011 - 20505562
Alignment:
Q  13 aatatattattcaacttattacatacttacatagtaaaaacacagaatttattaaaacaagaacttaagttacataatcaagttcactagcaatgtaaaa 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20506011 aatatattattcaacttattacatgcttacatagtaaaaacacagaatttatcaaaacaagaacttaagttacataatcaagttcactagcaatgtaaaa 20505912  T
Q  113 attcaagcaaaagacttaataattccatcttcataagaattaaaggtctcagaaaatacaaaagcagaaacttgttggtccgtcaaaatcaaacgtcctc 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  20505911 attcaagcaacagacttaataattccatcttcataagaattaacagtctcagaaaatacaaaagcagaaatttgttggtcagtcaaaatcaaacgtcctc 20505812  T
Q  213 caacttaaccattattataaaacccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataactaagaccatatttttgaatatt 312  Q
    |||||| |||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20505811 caacttcaccat-----------ccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataactaagaccatatttttgaatgtt 20505723  T
Q  313 aaatgttccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccatttt 412  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  20505722 aaatgt-ccattcactatttgcataccaggatagttttctcgaccaccaataccaacacaaaatatattaataacattatcaataaatatcaaccatttt 20505624  T
Q  413 gatgattcaacacaatcaggcttctttgtgaactcaatctcaattggtctacccgtcaagat 474  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20505623 gatgattcaacacaatcaggcttctttgtgaactcaatctcgattggtctacccgtcaagat 20505562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 337 - 475
Target Start/End: Complemental strand, 20475895 - 20475757
Alignment:
Q  337 accaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccattttgatgattcaacacaatcaggcttc 436  Q
    ||||||||| ||||| |||||||||||||||||| ||  ||| | ||||||| |||||| ||||||||||||||||||||||||||| |||| |||||||    
T  20475895 accaggataattttcaggaccaccaataccaacacaagctttttgaataacactatcaacaaatatcaaccattttgatgattcaacgcaattaggcttc 20475796  T
Q  437 tttgtgaactcaatctcaattggtctacccgtcaagatt 475  Q
    ||||||||||| || ||||||||| |||| || ||||||    
T  20475795 tttgtgaactcgatatcaattggtgtaccagtgaagatt 20475757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 307 - 427
Target Start/End: Complemental strand, 20517759 - 20517633
Alignment:
Q  307 aatattaaatgttccattcactatttgcatacc---aggatagttttctggaccaccaataccaacaaaaaatttatt---aataacattatcaataaat 400  Q
    |||||||||| ||||||||| ||||||  ||||   |||||||||||| ||||||||||||||||||||  |||| ||   | |||||||||||| ||||    
T  20517759 aatattaaattttccattcaatatttgtgtaccttgaggatagttttcaggaccaccaataccaacaaatgatttgttgttattaacattatcaacaaat 20517660  T
Q  401 atcaaccattttgatgattcaacacaa 427  Q
    |||||||||||||||||||||||||||    
T  20517659 atcaaccattttgatgattcaacacaa 20517633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 305 - 465
Target Start/End: Complemental strand, 20493742 - 20493582
Alignment:
Q  305 tgaatattaaatgttccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatca 404  Q
    |||||||||||| |||| |||| | |||||| ||||||||| ||||| |||||||||||||||| | ||  |||   |||||||||||||| |||||| |    
T  20493742 tgaatattaaattttcccttcaatgtttgcacaccaggataattttcaggaccaccaataccaatacaagcttttccaataacattatcaacaaatatta 20493643  T
Q  405 accattttgatgattcaacacaatcaggcttctttgtgaactcaatctcaattggtctacc 465  Q
    ||||||||| |||| || |||||  ||| || || ||| |||| ||||||| |||| ||||    
T  20493642 accattttgttgatgcagcacaactaggttttttcgtgtactcgatctcaagtggtgtacc 20493582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 2917092 - 2917028
Alignment:
Q  391 atcaataaatatcaaccattttgatgattcaacacaatcaggcttctttgtgaactcaatctcaa 455  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  2917092 atcaagaaacatcaaccattttgatgattcagcacaatcaggcttcttagtaaactcaatctcaa 2917028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 2930680 - 2930616
Alignment:
Q  391 atcaataaatatcaaccattttgatgattcaacacaatcaggcttctttgtgaactcaatctcaa 455  Q
    ||||| ||| |||||||||||||||| |||| ||||||||| ||| || |||||||| |||||||    
T  2930680 atcaacaaacatcaaccattttgatgcttcagcacaatcagcctttttagtgaactcgatctcaa 2930616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 6869512 - 6869563
Alignment:
Q  401 atcaaccattttgatgattcaacacaatcaggcttctttgtgaactcaatct 452  Q
    |||||||||| ||||||||  ||||||| ||||||||| |||||||||||||    
T  6869512 atcaaccattgtgatgatttgacacaattaggcttcttagtgaactcaatct 6869563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 24555125 - 24555007
Alignment:
Q  337 accaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccattttgatgattcaacacaatcaggcttc 436  Q
    ||||||||||||| | |||||||||||||||||||||  |   | | | |||| ||||| ||  ||||||||||| || |||||| ||||||| |||||     
T  24555125 accaggatagtttgcaggaccaccaataccaacaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatctggcttg 24555026  T
Q  437 tttgtgaactcaatctcaa 455  Q
    ||  ||||||| |||||||    
T  24555025 ttaatgaactcgatctcaa 24555007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 20476126 - 20476090
Alignment:
Q  115 tcaagcaaaagacttaataattccatcttcataagaa 151  Q
    |||||||| |||||||||||||||| |||||||||||    
T  20476126 tcaagcaacagacttaataattccagcttcataagaa 20476090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 320 - 436
Target Start/End: Original strand, 13072234 - 13072350
Alignment:
Q  320 ccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccattttgatgatt 419  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||| |||||||||||||||||| ||||    
T  13072234 ccattcaatatttgcataccaggatagttttctggaccaccaataccaacacaagatttttgaataacattatcaacaaatatcaaccattttgaagatt 13072333  T
Q  420 caacacaatcaggcttc 436  Q
    |||||||||||||||||    
T  13072334 caacacaatcaggcttc 13072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 13072097 - 13072191
Alignment:
Q  195 tcaaaatcaaacgtcctccaacttaaccattattataaaacccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataa 289  Q
    |||||||||| |||||||| |  | |||| | |||||| |||||||||  ||||||  | ||| |||||||| ||||||||| ||||||||||||    
T  13072097 tcaaaatcaatcgtcctcccatctcaccaatcttataatacccaatatccgaacaattagtagtagatccattaacacaaaacacaaacttataa 13072191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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