View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_5 (Length: 486)
Name: NF20027_low_5
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 47 - 441
Target Start/End: Original strand, 52402628 - 52403022
Alignment:
| Q |
47 |
gaggtttcaataaattttcttccttattatggctaattggattaatgaaaaagaatgagatggagcttaatagtgaaacaaagtctaatttcattcgttt |
146 |
Q |
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| T |
52402628 |
gaggtttcaataaattttcttccttattatggctaattggattaatgaaaaagaatgagatggagcttaatagtgagacaaagtctaatttcattcgttt |
52402727 |
T |
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| Q |
147 |
gtgagaaatgatctataacttatttgcaattatattggccctatcaataataagattgtaagattttttgcatagaatgggttagacacactggaaaaca |
246 |
Q |
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| T |
52402728 |
gtgagaaatgatctataacttctttgcaattatattggccctatcaataataagattgtaagattttttgcatagaatgggttagacacaccggaaaaca |
52402827 |
T |
|
| Q |
247 |
agccttatctacctttaaatccgttagaaattgatactgaacatagaaatataaaagaaacaactcatctgattaattaagaaatcacagccagcgacac |
346 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52402828 |
agccttatctacctttaaatccgttagaaattgataccgaacatagaaatataaaagaaacaactcatctgattaattaagaaatcacagccagtcacac |
52402927 |
T |
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| Q |
347 |
tgaaataagaaaaatatcacgggtgataccaaacaaagttcaacacatgaccaagaaataaaatcatcctcgattaaacctatgttctattttcc |
441 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52402928 |
tgaaataaaaaaaatatcacggttgataccaaacaaagttcaacacatgaccaagaaataaaatcatcctcgattaaacctatgttctattttcc |
52403022 |
T |
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