View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_7 (Length: 458)
Name: NF20027_low_7
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_7 |
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| [»] scaffold0054 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 19869472 - 19869890
Alignment:
| Q |
19 |
tgagtctgaagtaaagtactagtaatgtaaatgtatggctagggtagttttacatacacataaatttccctttactcactcttgtcattactgttatttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19869472 |
tgagtctgaagtaaagtactagtaatgtaaatgtatggctagggtagttttacatacacataaatttcccttttctcactcttgtcattactgttatttt |
19869571 |
T |
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| Q |
119 |
ccatctaatgacacactgatcacgtgggtcctacagtctaggtcatgctctggctagggctcttttcccaatattatggcactgtacatgcctatttcta |
218 |
Q |
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| T |
19869572 |
ccatctaatgacacactgatcacgtgggtcctacagtctaggtcatgctctggctagggctcttttcccaatattatggcactgtacatccctatttcta |
19869671 |
T |
|
| Q |
219 |
gtggtcctttaactatactttaccactttctttaccgaaacactacttatctgtcctattccttcccagttttcaccttctgcactgtgcttgcaagctg |
318 |
Q |
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| T |
19869672 |
gtggtcctttaactctactttaccactttctttaccgaaacactacttatctgtcctattcctacccagttttcaccttctgcactgtgcttgcaagctg |
19869771 |
T |
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| Q |
319 |
ctctgccacgcgcaacagttccatacggcatgacatatggatatatggttacacccaaactactctagttgcaatgcaacaaacaccttaacttggatgg |
418 |
Q |
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| T |
19869772 |
ctctgccacgcgcaacagttccatacggcatgccatatggatatatggttacacccaaactactctagttgcaatgcaacaaacaccttaacttggatgg |
19869871 |
T |
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| Q |
419 |
atatttttctttaatttaa |
437 |
Q |
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| T |
19869872 |
atatttttgtttaatttaa |
19869890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 430 - 458
Target Start/End: Complemental strand, 23991213 - 23991185
Alignment:
| Q |
430 |
taatttaagagaaatgatatttgtacaac |
458 |
Q |
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| T |
23991213 |
taatttaagagaaatgatatttgtacaac |
23991185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 422 - 458
Target Start/End: Complemental strand, 31676 - 31640
Alignment:
| Q |
422 |
tttttctttaatttaagagaaatgatatttgtacaac |
458 |
Q |
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| T |
31676 |
tttttcttttctttaagagaaatgatatttgtacaac |
31640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 426 - 458
Target Start/End: Original strand, 37064071 - 37064103
Alignment:
| Q |
426 |
tctttaatttaagagaaatgatatttgtacaac |
458 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
37064071 |
tctttattttaagagaaatgatatttgtacaac |
37064103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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