View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20027_low_8 (Length: 446)
Name: NF20027_low_8
Description: NF20027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20027_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 25563050 - 25563410
Alignment:
| Q |
17 |
gaaacttggtgtggtagcatgatgataaagagtattgaatcaagaagaaacgtaaaaagcacggagaattgaagcaccaaatcaattataatatgagaaa |
116 |
Q |
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| T |
25563050 |
gaaacttggtgtggaggcatgatgataaagagtattgaatcaagaagaaacgtaaaaagcacggagaattgaagcaccaagtcagttataatatgagaaa |
25563149 |
T |
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| Q |
117 |
accaaagaatcttgttgaatatgcaagattataacagtaaaaatggatgaagattgttgaatatcaaagagaaatgatgaacaatgagtgcagcaaacaa |
216 |
Q |
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| T |
25563150 |
accaaagaatcttgttgaatatgcaagattataacagtaaaaatggatgaagattgttgaatatcaaagagaaatgatgaacaatgagtgcagcaaacaa |
25563249 |
T |
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| Q |
217 |
cgtttacaaattgtaaatttctatctctcgagaagcggaaaagtttgatgccatattatgagatacacaatgctgaatgaaagaagaattctccattagt |
316 |
Q |
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| T |
25563250 |
cgtttacaaattgtaaatttctatctctcgagaagcggaaaagttagatgccatattatgagatacacaatgttgaatgaaagaagaattctccattagt |
25563349 |
T |
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| Q |
317 |
tttgtatgaatgtttgtttagtatatactcctttagagtgataaaagtcctcatgataattaaagtgat |
385 |
Q |
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| T |
25563350 |
tttgtatgaa----tgtttagtacata----tttagagtgataaaagtcctcatgataattaaagtgat |
25563410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 25563453 - 25563494
Alignment:
| Q |
393 |
taacttgctatgcaggtcttactaaaataagttatgtaacct |
434 |
Q |
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| T |
25563453 |
taacttgctatgcaggtctcactaaaagatgttatgtaacct |
25563494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 23777612 - 23777669
Alignment:
| Q |
270 |
tattatgagatacacaatgctgaatgaaagaagaattctccattagttttgtatgaat |
327 |
Q |
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| T |
23777612 |
tattatgagattcacgatagtgaatgaaagaagaattctccattagtttcatatgaat |
23777669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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