View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20028_high_11 (Length: 388)
Name: NF20028_high_11
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 42468007 - 42468361
Alignment:
| Q |
11 |
ttattcttatagcgagttttctatcagtaaatgttgaatcttttatccaagagnnnnnnnngaccagaaaacttcgacacatctgagcaagtaatagctc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42468007 |
ttattcttatagcgagttttctatcagtaaatgttgaatcttttatccaagagagaaaaaagaccagaaaacttcgacacatctgagcaagtaatagctc |
42468106 |
T |
|
| Q |
111 |
aataagtatacactcattattaatggaaaagacatattgactagtaacaatatatttgtagggatgaaatacataacgaagcttatattattttcatcct |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42468107 |
aataagcatacactcattattaatggaaaagacatattgactagta-caatatatttgtagggatgaaatacataatgaagcttatattattttcatcct |
42468205 |
T |
|
| Q |
211 |
gcgtgatgcggatcaatatgtagctagcttacgtaattaacaacagaagccaacaattactagatatgtggaaaacaacaaagagtcacacttttattac |
310 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42468206 |
gcgtgatgcaggtcaatatgtagctagcttacataattaacaacagaagccaacaat-------tatgtggaaaacaacaaggagtcacacttttattac |
42468298 |
T |
|
| Q |
311 |
atcaatttttattc-ttaagtatcacagtactggcagcattatgacgattagacagtcatacc |
372 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42468299 |
atcaatttttattctttaagtatcacagtactggcagcattatgacgattacacagtcatacc |
42468361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University