View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20028_high_18 (Length: 343)

Name: NF20028_high_18
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20028_high_18
NF20028_high_18
[»] chr7 (11 HSPs)
chr7 (12-327)||(34225927-34226236)
chr7 (12-327)||(34230055-34230364)
chr7 (59-161)||(20362704-20362806)
chr7 (125-273)||(17188456-17188600)
chr7 (125-197)||(29332807-29332878)
chr7 (150-273)||(37479498-37479617)
chr7 (149-227)||(14719291-14719367)
chr7 (144-265)||(48143687-48143807)
chr7 (186-273)||(7280219-7280302)
chr7 (232-265)||(20362865-20362898)
chr7 (200-273)||(36331599-36331672)
[»] scaffold0214 (1 HSPs)
scaffold0214 (52-324)||(29404-29676)
[»] chr8 (3 HSPs)
chr8 (74-229)||(17909816-17909971)
chr8 (145-197)||(29185560-29185612)
chr8 (144-184)||(12642474-12642514)
[»] scaffold0184 (1 HSPs)
scaffold0184 (59-194)||(10788-10923)
[»] chr5 (9 HSPs)
chr5 (60-194)||(17935516-17935650)
chr5 (60-132)||(17945793-17945865)
chr5 (126-194)||(17964342-17964410)
chr5 (144-238)||(7823077-7823169)
chr5 (59-120)||(22229610-22229671)
chr5 (221-273)||(7823024-7823075)
chr5 (145-197)||(24213313-24213365)
chr5 (233-273)||(25214346-25214386)
chr5 (233-273)||(25278496-25278536)
[»] scaffold0496 (1 HSPs)
scaffold0496 (59-176)||(9103-9222)
[»] chr1 (8 HSPs)
chr1 (62-273)||(14762175-14762385)
chr1 (60-171)||(18188205-18188316)
chr1 (145-197)||(11444055-11444107)
chr1 (219-274)||(25258172-25258227)
chr1 (122-220)||(11323649-11323744)
chr1 (122-220)||(11481670-11481765)
chr1 (145-194)||(29530196-29530245)
chr1 (145-194)||(29547851-29547900)
[»] chr2 (10 HSPs)
chr2 (65-194)||(19084496-19084625)
chr2 (64-194)||(19089523-19089653)
chr2 (62-190)||(23453543-23453671)
chr2 (145-238)||(19912376-19912468)
chr2 (170-258)||(17843256-17843341)
chr2 (145-193)||(21289632-21289680)
chr2 (129-172)||(16443318-16443361)
chr2 (63-114)||(17843119-17843170)
chr2 (145-194)||(25232094-25232143)
chr2 (145-197)||(21294926-21294978)
[»] chr6 (4 HSPs)
chr6 (52-197)||(21142981-21143127)
chr6 (190-265)||(5914147-5914221)
chr6 (122-208)||(11302260-11302346)
chr6 (122-227)||(23599947-23600052)
[»] chr3 (6 HSPs)
chr3 (144-273)||(13100804-13100933)
chr3 (145-227)||(44126723-44126805)
chr3 (129-223)||(13921650-13921741)
chr3 (62-166)||(7117150-7117254)
chr3 (233-273)||(7873789-7873829)
chr3 (200-258)||(21587127-21587185)
[»] chr4 (7 HSPs)
chr4 (146-223)||(5351027-5351104)
chr4 (144-227)||(6408033-6408114)
chr4 (129-223)||(13994819-13994910)
chr4 (129-223)||(14000124-14000214)
chr4 (233-286)||(2928751-2928804)
chr4 (145-227)||(12746536-12746618)
chr4 (233-271)||(52311172-52311210)
[»] scaffold0248 (1 HSPs)
scaffold0248 (122-210)||(16194-16282)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 327
Target Start/End: Complemental strand, 34226236 - 34225927
Alignment:
Q  12 ataggcctcaatctcactacggttatcaataatattaatatttccacgttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34226236 ataggcctcaatctcactacggttatcaataatattaatatttccacgttccttaactcctatgagtgaatgcctatattcattgttattgacacttagt 34226137  T
Q  112 cttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34226136 cttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacac 34226037  T
Q  212 aaagctttcatcttctccatatttgatcttgtctttttagtttatttcataacacgttatcaacacaatgctctagccatgagtaatttttatttttgct 311  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      ||||||||||||||||||||||    
T  34226036 aaagccttcatcttctccatatttgatcttgtctttttagtttatttcataacacgttatcaacacgatgct------atgagtaatttttatttttgct 34225943  T
Q  312 gaaatatgttaatatt 327  Q
    ||||||||||||||||    
T  34225942 gaaatatgttaatatt 34225927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 327
Target Start/End: Complemental strand, 34230364 - 34230055
Alignment:
Q  12 ataggcctcaatctcactacggttatcaataatattaatatttccacgttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34230364 ataggcctcaatctcactacggttatcaataatattaatatttccacgttccttaactcctatgagtgaatgcctatattcattgttattgacacttagt 34230265  T
Q  112 cttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230264 cttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacac 34230165  T
Q  212 aaagctttcatcttctccatatttgatcttgtctttttagtttatttcataacacgttatcaacacaatgctctagccatgagtaatttttatttttgct 311  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||      ||||||||||||||||||||||    
T  34230164 aaagccttcatcttctccatatttgatcttgtctttttagtttatttcataacacgttatcaacacgatgct------atgagtaatttttatttttgct 34230071  T
Q  312 gaaatatgttaatatt 327  Q
    ||||||||||||||||    
T  34230070 gaaatatgttaatatt 34230055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 20362704 - 20362806
Alignment:
Q  59 gttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctata 158  Q
    |||||||||||||||  ||| ||||||||||||| ||||||||| |  |||||| ||||||| |||||||| ||||||||||||| ||||||||||||||    
T  20362704 gttccttaactcctactagtaaatgcctatattcgttgttattggcaattagtcatatggttcttcatgtaattgtaacttaccacatttgtgtcctata 20362803  T
Q  159 aat 161  Q
    |||    
T  20362804 aat 20362806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 17188456 - 17188600
Alignment:
Q  125 atgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatct 224  Q
    |||||||||||| | || |||||||||||||||||||| |||||||| | ||||||||| || ||||||   |  ||||||||  |||||||| ||||||    
T  17188456 atgtacttgtaattcacaatatttgtgtcctataaataagacttata-tacaatgtaaagaatacacttaaaaagagaataat--acaaagctctcatct 17188552  T
Q  225 tctccatatttgatcttgtctttttagtttatttcataacacgttatca 273  Q
    |||| || |||||| |||||  ||||||||| || ||||||||||||||    
T  17188553 tctctatttttgatattgtc-atttagtttagtttataacacgttatca 17188600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 29332807 - 29332878
Alignment:
Q  125 atgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtga 197  Q
    ||||||||||||||||||  |||| | | ||||||||| |||||||||| |||||||||||||||| ||||||    
T  29332807 atgtacttgtaacttacctcattt-tattctataaatacgacttatattgcaatgtaaataacacatttgtga 29332878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 37479617 - 37479498
Alignment:
Q  150 tgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttctccatatttgatcttgtcttttt 249  Q
    ||||||||||||||||| |||||| ||||||||| || ||| ||||||  ||||||||||| ||||||||| || ||| | | |||  |||| |  ||||    
T  37479617 tgtcctataaataggacctatattgcaatgtaaagaa-acatttgtgaagagaataataca-aaagctttcttcatcttcttcttt-ttctt-tgatttt 37479522  T
Q  250 agtttatttcataacacgttatca 273  Q
    ||||||||||| ||||||||||||    
T  37479521 agtttatttcacaacacgttatca 37479498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 14719367 - 14719291
Alignment:
Q  149 gtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttct 227  Q
    |||||||||||||||| || |||||  | |||||||  |||||||||||  ||||||||||| ||||||||||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaat-gcacacttgtgaagagaataataca-aaagctttcatcttct 14719291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 265
Target Start/End: Original strand, 48143687 - 48143807
Alignment:
Q  144 tatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaa-gaataatacacaaagctttcatcttctccatatttgatcttg 242  Q
    ||||||| |||||||||||||||| || |||  | ||||| | |||| ||||||||| ||||||| || |||||||||||||||| | | || ||||||     
T  48143687 tatttgtatcctataaataggactcatgttttgaggtaaaga-cacatttgtgagaaagaataatgca-aaagctttcatcttcttcttcttggatcttt 48143784  T
Q  243 tctttttagtttatttcataaca 265  Q
    |  ||| ||||||||||||||||    
T  48143785 tactttgagtttatttcataaca 48143807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 7280219 - 7280302
Alignment:
Q  186 acacacttgtgagaagaataatacacaaagctttcatcttctccatatttgatcttgtctttttagtttatttcataacacgttatca 273  Q
    ||||||||||||  |||||| || | |||||||| ||||||| |   |||||||||||  |||||||||||||||||||| |||||||    
T  7280219 acacacttgtgaagagaatagtaga-aaagcttttatcttcttc---tttgatcttgtacttttagtttatttcataacatgttatca 7280302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 20362865 - 20362898
Alignment:
Q  232 atttgatcttgtctttttagtttatttcataaca 265  Q
    |||||||||||| |||||||||||||||||||||    
T  20362865 atttgatcttgtatttttagtttatttcataaca 20362898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 36331599 - 36331672
Alignment:
Q  200 agaataatacacaaagctttcatcttctccatatttgatcttgtctttttagtttatttcataacacgttatca 273  Q
    |||||||||||||||| | |||||||||   | ||| |||||||| ||| | |||||||||||||| |||||||    
T  36331599 agaataatacacaaagttctcatcttctatgtctttaatcttgtcctttaaatttatttcataacatgttatca 36331672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 52 - 324
Target Start/End: Complemental strand, 29676 - 29404
Alignment:
Q  52 tttccacgttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtg 151  Q
    |||||| ||| ||||||||||||||||||||||||||||||||  |||||| | ||||||||||||| |||||||||||||||||||||||| |||||||    
T  29676 tttccatgtttcttaactcctatgagtgaatgcctatattcatatttattggcacttagtcttatggcttttcatgtacttgtaacttaccacatttgtg 29577  T
Q  152 tcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttctccatatttgatcttgtctttttag 251  Q
    |||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  29576 tcctataaataggacttatatttctatgtaaagaacacacttattagaagaataatacaaaaagctttcatcttctccatctttgatcttgtctttttag 29477  T
Q  252 tttatttcataacacgttatcaacacaatgctctagccatgagtaatttttatttttgctgaaatatgttaat 324  Q
    | |||||||||| | |||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||||    
T  29476 tctatttcataaaatgttatcaacataatgctttagccatgagtaatttttatttttgttgaattatgttaat 29404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 17909816 - 17909971
Alignment:
Q  74 tgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatt 173  Q
    ||||||||||||||||||||| |||| |||| ||||||| ||||| | |||||||||||||||||||||| || |||||||||||||||||||||||||     
T  17909816 tgagtgaatgcctatattcatagttaatgacacttagtcctatggctcttcatgtacttgtaacttaccacatgtgtgtcctataaataggacttatatc 17909915  T
Q  174 tcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttctcc 229  Q
    |||||||||| |||||||||| ||  ||||||||||| |   ||||||||||||||    
T  17909916 tcaatgtaaagaacacacttgagaagagaataatacaaagtactttcatcttctcc 17909971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 29185612 - 29185560
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtga 197  Q
    |||||||||||||||||||||| ||||||  |||||||| |||||||||||||    
T  29185612 atttgtgtcctataaataggacatatattgtaatgtaaaaaacacacttgtga 29185560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 12642514 - 12642474
Alignment:
Q  144 tatttgtgtcctataaataggacttatatttcaatgtaaat 184  Q
    ||||||||||||||||||||||| |||| |||| |||||||    
T  12642514 tatttgtgtcctataaataggacctataattcattgtaaat 12642474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 10923 - 10788
Alignment:
Q  59 gttccttaactcctatgagtgaatgcctata-ttcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctat 157  Q
    |||| ||||||| |||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  10923 gttcattaactcatatgagtgaatgtctataattcattgttattggctcttagtcttatggtttttcatgtacttgtaacttaccacatttgtatcctat 10824  T
Q  158 aaataggacttatatttcaatgtaaataacacacttg 194  Q
    ||||| ||| |||||| ||| |||||| |||||||||    
T  10823 aaatatgacatatattgcaaagtaaat-acacacttg 10788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 60 - 194
Target Start/End: Original strand, 17935516 - 17935650
Alignment:
Q  60 ttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctataa 159  Q
    |||||||||||||| |||||||||| |||||| || |||| |||| ||||||||||||| | ||||||||||||||||||| || || ||||| ||||||    
T  17935516 ttccttaactcctaagagtgaatgcatatattgatagttaatgacacttagtcttatggctcttcatgtacttgtaacttatcacatgtgtgttctataa 17935615  T
Q  160 ataggacttatatttcaatgtaaataacacacttg 194  Q
    ||||||||||||| ||||||||||  |||||||||    
T  17935616 ataggacttatatctcaatgtaaaagacacacttg 17935650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 17945793 - 17945865
Alignment:
Q  60 ttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtactt 132  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||| ||||||||||||| | |||||||||||    
T  17945793 ttccttaactcctaagagtaaatgcctatattcatagttaatgacacttagtcttatggctcttcatgtactt 17945865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 17964342 - 17964410
Alignment:
Q  126 tgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttg 194  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||| || |||||||  |||||||||    
T  17964342 tgtacttgtaacttaccacatgtgtgtcctataaatatgacttatatctcgatgtaaaggacacacttg 17964410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 7823169 - 7823077
Alignment:
Q  144 tatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttctccatatttgat 238  Q
    ||||||||||||||||||||||||||| |||  ||||||| || ||||||||||  ||||||||||| |||| | |||||||||| || ||||||    
T  7823169 tatttgtgtcctataaataggacttatgttttgatgtaaagaa-acacttgtgaagagaataataca-aaagttctcatcttctctatctttgat 7823077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 22229671 - 22229610
Alignment:
Q  59 gttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtt 120  Q
    ||||||||||||||||| |||||||  ||||||| ||||||||| |  ||||||||||||||    
T  22229671 gttccttaactcctatgtgtgaatgattatattcgttgttattggcatttagtcttatggtt 22229610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 7823075 - 7823024
Alignment:
Q  221 atcttctccatatttgatcttgtctttttagtttatttcataacacgttatca 273  Q
    |||||||| | ||||||| ||||| ||| ||||||||||||||||||||||||    
T  7823075 atcttctctacatttgattttgtcattt-agtttatttcataacacgttatca 7823024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 24213365 - 24213313
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtga 197  Q
    |||||||||||||||||||||| ||||||  ||||||||  ||| ||||||||    
T  24213365 atttgtgtcctataaataggacctatattgtaatgtaaagtacatacttgtga 24213313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 25214386 - 25214346
Alignment:
Q  233 tttgatcttgtctttttagtttatttcataacacgttatca 273  Q
    |||||||| ||  ||||||||||||||||||||||||||||    
T  25214386 tttgatctagtgcttttagtttatttcataacacgttatca 25214346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 25278536 - 25278496
Alignment:
Q  233 tttgatcttgtctttttagtttatttcataacacgttatca 273  Q
    |||||||| ||  ||||||||||||||||||||||||||||    
T  25278536 tttgatctagtgcttttagtttatttcataacacgttatca 25278496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 176
Target Start/End: Complemental strand, 9222 - 9103
Alignment:
Q  59 gttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttac--catatttgtgtccta 156  Q
    |||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||| | |||||||| |||||||||||  ||||| ||| |||||    
T  9222 gttccttaactcctatgagtgaatgcatatattcattgttattggaacttagtcttatggctcttcatgtatttgtaacttaccacatatatgtctccta 9123  T
Q  157 taaataggacttatatttca 176  Q
    ||||||||||||||||||||    
T  9122 taaataggacttatatttca 9103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 273
Target Start/End: Complemental strand, 14762385 - 14762175
Alignment:
Q  62 ccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaat 161  Q
    |||||||||| | |||||||||| |||||| ||||||||| ||  |||||||||||  | |||||||||||||||||||  | |||||||| ||||||||    
T  14762385 ccttaactccgacgagtgaatgcatatatttattgttatttacatttagtcttatgactcttcatgtacttgtaacttattacatttgtgttctataaat 14762286  T
Q  162 aggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttctccatatttgatcttgtctttttagtttatttcat 261  Q
    |||||||||||| |||||||||||||  |||||| |  | ||||||||| |||||| | |||||||| || | | |||||||| ||||  || ||||| |    
T  14762285 aggacttatattgcaatgtaaataacttacttgtaaagataataataca-aaagctctaatcttctcaatctctaatcttgtcattttgattaatttcgt 14762187  T
Q  262 aacacgttatca 273  Q
    |||| |||||||    
T  14762186 aacatgttatca 14762175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 18188316 - 18188205
Alignment:
Q  60 ttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctataa 159  Q
    |||||||||||||| |||||||||| ||||||||| |||| |||  ||||||||||||| | ||||| |||||||||||||||| || ||||||||||||    
T  18188316 ttccttaactcctaagagtgaatgcttatattcatagttaatgatacttagtcttatggctcttcatctacttgtaacttaccacatgtgtgtcctataa 18188217  T
Q  160 ataggacttata 171  Q
    |||| |||||||    
T  18188216 atagaacttata 18188205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 11444107 - 11444055
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtga 197  Q
    |||||||||||||||||||||||||||||  ||||| ||| ||||||||||||    
T  11444107 atttgtgtcctataaataggacttatattataatgtgaattacacacttgtga 11444055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 25258227 - 25258172
Alignment:
Q  219 tcatcttctccatatttgatcttgtctttttagtttatttcataacacgttatcaa 274  Q
    ||||||||| |||||||||||||||  ||||| ||||||| |||||||||||||||    
T  25258227 tcatcttctacatatttgatcttgttcttttaatttattttataacacgttatcaa 25258172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 11323744 - 11323649
Alignment:
Q  122 ttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttc 220  Q
    ||||| |||||||||||||| |||||| |||| |||||||||||  |||| | |||||||||  ||||| ||||||  ||||||  |||||||||||||    
T  11323744 ttcatttacttgtaacttacaatatttatgtcttataaataggatctata-tgcaatgtaaaatacacatttgtgaagagaata--acacaaagctttc 11323649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 11481765 - 11481670
Alignment:
Q  122 ttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttc 220  Q
    ||||| |||||||||||||| |||||| |||| |||||||||||  |||| | |||||||||  ||||| ||||||  ||||||  |||||||||||||    
T  11481765 ttcatttacttgtaacttacaatatttatgtcttataaataggatctata-tgcaatgtaaaatacacatttgtgaagagaata--acacaaagctttc 11481670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 29530196 - 29530245
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttg 194  Q
    ||||||||| |||||||||||| ||||||  |||||||| ||||||||||    
T  29530196 atttgtgtcatataaataggacctatattgtaatgtaaagaacacacttg 29530245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 29547851 - 29547900
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttg 194  Q
    |||| ||||||||||||||||| ||||||  |||||||| ||||||||||    
T  29547851 atttatgtcctataaataggacctatattgtaatgtaaagaacacacttg 29547900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 19084496 - 19084625
Alignment:
Q  65 taactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaatagg 164  Q
    |||||||||||| |||||||||||||||| ||||| || | |  |||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||    
T  19084496 taactcctatgaatgaatgcctatattcaatgttagtggcacccagtcttatggctcttcatgtacttgtaacttaccacatttgtgtcatataaatagg 19084595  T
Q  165 acttatatttcaatgtaaataacacacttg 194  Q
    ||||||||||   |||||| ||||||||||    
T  19084596 acttatatttgcttgtaaagaacacacttg 19084625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 19089523 - 19089653
Alignment:
Q  64 ttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaatag 163  Q
    ||||||||||||| |||||||||||||||| ||||| || || |   |||||||  | ||||||||||| |||||||||| ||||||||| |||||||||    
T  19089523 ttaactcctatgaatgaatgcctatattcaatgttagtggcggtcgatcttatgactcttcatgtacttttaacttaccacatttgtgtcatataaatag 19089622  T
Q  164 gacttatatttcaatgtaaataacacacttg 194  Q
    |||||||||||||||||||| ||| ||||||    
T  19089623 gacttatatttcaatgtaaagaacgcacttg 19089653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 23453543 - 23453671
Alignment:
Q  62 ccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaat 161  Q
    ||||||||| | |||| ||||| || |||||||||||||||||  |||| ||||||  | ||||||||||||||| |||| |  ||| ||||||||||||    
T  23453543 ccttaactcatttgagcgaatgactttattcattgttattgacatttagccttatgactattcatgtacttgtaagttacaaattttctgtcctataaat 23453642  T
Q  162 aggacttatatttcaatgtaaataacaca 190  Q
    ||||| |||||| | || |||||||||||    
T  23453643 aggacatatattgccatataaataacaca 23453671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 19912376 - 19912468
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttctccatatttgat 238  Q
    |||||||||||||||||||||| ||||||  ||||||||  | ||||||||||  ||||||||||| |||||| |||||||||| || ||||||    
T  19912376 atttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataataca-aaagctctcatcttctctatctttgat 19912468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 17843256 - 17843341
Alignment:
Q  170 tatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttctccatatttgatcttgtctttttagtttattt 258  Q
    |||||||||||||| ||||||||| | | |||||||   || |||||| ||||||| | ||| ||||||||| ||||||||||||||||    
T  17843256 tatttcaatgtaaaaaacacacttataaaaagaata---cataaagctgtcatcttattcatctttgatcttatctttttagtttattt 17843341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 21289680 - 21289632
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacactt 193  Q
    |||||||||||||||||||||||||||||  ||||| ||| ||||||||    
T  21289680 atttgtgtcctataaataggacttatattgtaatgtgaatgacacactt 21289632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 16443361 - 16443318
Alignment:
Q  129 acttgtaacttaccatatttgtgtcctataaataggacttatat 172  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||    
T  16443361 acttgtaacttacaatatttgtgtcttataaataggacctatat 16443318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 17843119 - 17843170
Alignment:
Q  63 cttaactcctatgagtgaatgcctatattcattgttattgacgcttagtctt 114  Q
    |||||||||||||| |||||| || ||||||||||||||| | |||||||||    
T  17843119 cttaactcctatgaatgaatgtctctattcattgttattgccacttagtctt 17843170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 25232094 - 25232143
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttg 194  Q
    |||||||||| ||||||||||| ||||||  |||||||| ||||||||||    
T  25232094 atttgtgtcccataaataggacatatattgtaatgtaaagaacacacttg 25232143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 21294978 - 21294926
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtga 197  Q
    |||||| ||||||||||||||||||| ||  ||||| ||| ||||||||||||    
T  21294978 atttgtatcctataaataggacttatgttgtaatgtgaatgacacacttgtga 21294926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 21142981 - 21143127
Alignment:
Q  52 tttccacgttccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatattt-gt 150  Q
    |||| |||||| |||||||||| |||| |||||| ||||| | |  || || | ||||||||||||  | ||| |||| |||||||||||||||||| ||    
T  21142981 tttctacgttctttaactcctaagagttaatgccaatattaagtagtaatggcacttagtcttatgactcttcgtgtatttgtaacttaccatattttgt 21143080  T
Q  151 gtcctataaataggacttatatttcaatgtaaataacacacttgtga 197  Q
    || | ||||||||||||||||| |||||||||| |||||||||||||    
T  21143081 gttcaataaataggacttatatctcaatgtaaagaacacacttgtga 21143127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 5914147 - 5914221
Alignment:
Q  190 acttgtgagaagaataatacacaaagctttcatcttctccatatttgatcttgtctttttagtttatttcataaca 265  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||| ||||||||||||||||||||    
T  5914147 acttgtgagaagaataatacacaaagctctcatcttcttcatctttaatcttgtc-ttttagtttatttcataaca 5914221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 11302260 - 11302346
Alignment:
Q  122 ttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataata 208  Q
    |||||||| |||||| |||| |  ||||| |||||||||||||||||| ||| | ||||||| |||| | ||||||  |||||||||    
T  11302260 ttcatgtaattgtaaattacaacttttgtatcctataaataggacttacattaccatgtaaaaaacatatttgtgaagagaataata 11302346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 23600052 - 23599947
Alignment:
Q  122 ttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttca 221  Q
    |||||||| |||||| |||| |  ||| | ||||||||||||||| || ||| | |||||||  | |||||| |||  ||||||||||| || |||||||    
T  23600052 ttcatgtaattgtaagttacaacttttatatcctataaataggacctacattactatgtaaagtatacacttatgaagagaataatacaaaatgctttca 23599953  T
Q  222 tcttct 227  Q
    ||||||    
T  23599952 tcttct 23599947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 13100804 - 13100933
Alignment:
Q  144 tatttgtgtcctataaataggacttatatttcaatgtaaata-acacacttgtgagaagaataatacacaaagctttcatcttctccatatttgatcttg 242  Q
    ||||||| |||||||||||||||| || |||  ||||||| | ||||| || |||  ||||||||| |||||| ||||| ||||| ||| ||| ||||      
T  13100804 tatttgtatcctataaataggactcatgttttgatgtaaagatacacattt-tgaagagaataatatacaaagatttcaccttcttcatctttaatctga 13100902  T
Q  243 tctttttagtttatttcataacacgttatca 273  Q
    |||||||||||||||| ||||||||||||||    
T  13100903 tctttttagtttattttataacacgttatca 13100933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 44126805 - 44126723
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttct 227  Q
    |||||||||||||||||||||| ||||||  ||||| ||| ||||||||||||  ||||||||||| |   ||||||||||||    
T  44126805 atttgtgtcctataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaagtactttcatcttct 44126723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 13921650 - 13921741
Alignment:
Q  129 acttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatc 223  Q
    ||||| ||||||| ||||||||||| |||||||||||| |||| | |||||||||  | ||||||||||  ||||||  ||||||||||||||||    
T  13921650 acttgaaacttacaatatttgtgtcttataaataggacctata-tgcaatgtaaagtatacacttgtgaagagaata--acacaaagctttcatc 13921741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 7117254 - 7117150
Alignment:
Q  62 ccttaactcctatgagtgaatgcctatattcattgttattgacgcttagtcttatggtttttcatgtacttgtaacttaccatatttgtgtcctataaat 161  Q
    |||||| | |||||| | |||| || |||||||| |||||||   ||||||| ||| || ||||||||||||||| |||| |  ||||| ||||||||||    
T  7117254 ccttaatttctatgactaaatgtctttattcattcttattgatatttagtctcatgattcttcatgtacttgtaagttacaacttttgtatcctataaat 7117155  T
Q  162 aggac 166  Q
    |||||    
T  7117154 aggac 7117150  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 7873829 - 7873789
Alignment:
Q  233 tttgatcttgtctttttagtttatttcataacacgttatca 273  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  7873829 tttgatcttgtacttttagtttatttcataacacgttatca 7873789  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 21587185 - 21587127
Alignment:
Q  200 agaataatacacaaagctttcatcttctccatatttgatcttgtctttttagtttattt 258  Q
    ||||||||| || ||||| ||||||||| ||| |||||| ||||| |||||||||||||    
T  21587185 agaataatagactaagctctcatcttcttcatctttgatattgtccttttagtttattt 21587127  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 5351027 - 5351104
Alignment:
Q  146 tttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatc 223  Q
    |||||||||||||||||||||| |||||| | || |||  ||||||||||||  ||||||||| ||||||||||||||    
T  5351027 tttgtgtcctataaataggactcatattttattgaaaaagacacacttgtgaatagaataatatacaaagctttcatc 5351104  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 6408033 - 6408114
Alignment:
Q  144 tatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttct 227  Q
    ||||||||||||||||||||||| |||||| ||| |||||   |||||||||||  ||||||||||| ||| ||||||||||||    
T  6408033 tatttgtgtcctataaataggacctatattgcaaagtaaa-ggcacacttgtgaagagaataataca-aaatctttcatcttct 6408114  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 13994819 - 13994910
Alignment:
Q  129 acttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatc 223  Q
    ||||||||||||  || |||||||| |||||||||||| |||| | |||||||||  ||||||||||||  ||||||  ||||||||||||||||    
T  13994819 acttgtaacttaaaatgtttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttgtgaagagaata--acacaaagctttcatc 13994910  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 14000124 - 14000214
Alignment:
Q  129 acttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatc 223  Q
    ||||||||||||| |||||| |||| |||||||||||| |||| | |||||||| | ||||||||||||  ||||||  ||||||||||||||||    
T  14000124 acttgtaacttacaatatttatgtcttataaataggacctata-tgcaatgtaagt-acacacttgtgaagagaata--acacaaagctttcatc 14000214  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 2928804 - 2928751
Alignment:
Q  233 tttgatcttgtctttttagtttatttcataacacgttatcaacacaatgctcta 286  Q
    |||||||||||  ||||| |||||||||||||||||||||||||| | ||||||    
T  2928804 tttgatcttgtgcttttattttatttcataacacgttatcaacacgaagctcta 2928751  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 12746618 - 12746536
Alignment:
Q  145 atttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataatacacaaagctttcatcttct 227  Q
    ||||| ||||||||||||| || ||||||  ||||| ||| |||||||| ||| ||||||||||||  |  ||||||||||||    
T  12746618 atttgcgtcctataaatagaacctatattataatgtgaatgacacacttatgaaaagaataatacaatatactttcatcttct 12746536  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 52311210 - 52311172
Alignment:
Q  233 tttgatcttgtctttttagtttatttcataacacgttat 271  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  52311210 tttgatcttgtgtttttagtttattttataacacgttat 52311172  T

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Target: scaffold0248 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 16194 - 16282
Alignment:
Q  122 ttcatgtacttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataataca 210  Q
    |||||||| |||||| |||| |  ||||| ||||||||||||||| || ||| | ||||||| ||||||| |||||  | |||||||||    
T  16194 ttcatgtaattgtaagttacaacttttgtatcctataaataggacctacattgccatgtaaagaacacacctgtgaagaaaataataca 16282  T

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