View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20028_high_23 (Length: 290)
Name: NF20028_high_23
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 80 - 252
Target Start/End: Complemental strand, 4644988 - 4644816
Alignment:
| Q |
80 |
gtatggttttgaattataaaacagaaatgagagttttcctatctccacaattacgtgatcctaattgcttcccaaggagatcatttgaccatttcaatga |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4644988 |
gtatggttttgaattataaaacagaaatgagagttttcctatctccacaattacgtgatcctaattgcttcccaaggagatcatttgaccatttcaatga |
4644889 |
T |
|
| Q |
180 |
tcagtctcaagtgttgttttatggaaatttcccttcctacctcttaatgtatctaatctaataataataaata |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4644888 |
tcagtctcaagtgttgttttatggaaatttcccttcctacctctaaatgtatcaaatctaataataataaata |
4644816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 4654780 - 4654644
Alignment:
| Q |
81 |
tatggttttgaatt-ataaaacagaaatgagagttttcctatctccacaattacgtgatcctaattgcttcccaaggagatcatttgaccatttcaatga |
179 |
Q |
| |
|
||||||||| |||| |||||| ||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4654780 |
tatggttttcaattgataaaa-agaaatgagtgttttcctatc--cacaattatgtgatcctaattgctccccaaggaaatcatttgaccatttcaatga |
4654684 |
T |
|
| Q |
180 |
tcagtctcaagtgttgttttatggaaatttcccttcctac |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4654683 |
tcagtctcaagtgctgttttatggaaatttcccttcctac |
4654644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 4638053 - 4637978
Alignment:
| Q |
177 |
tgatcagtctcaagtgttgttttatggaaatttcccttcctacctcttaatgtatctaatctaataataataaata |
252 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4638053 |
tgatcactctcaagtgttgttttatgggaatttcctttcctacctctcaatgtatctaatctaataataataaata |
4637978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 4674030 - 4673856
Alignment:
| Q |
73 |
ttctttagtatggttttgaattataaaacagaaatgagagttttcctatctccacaattacgtgatcctaattgcttcccaaggagatcatttgaccatt |
172 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| ||||| |||||| |||||||| |||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
4674030 |
ttctttcgtatggtttttaattataaaacagaaatgaaagttt-cctatc--cacaattatgtgatcctaatttcttcctaaggaaatcatttgaccatt |
4673934 |
T |
|
| Q |
173 |
tca--------------atgatcagtctcaagtgttgttttatggaaatttcccttcctacctcttaatgtatctaat |
236 |
Q |
| |
|
||| ||||||||||||||||||| |||||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
4673933 |
tcaatgcaatggatttcatgatcagtctcaagtgtttttttataaaaatctcccttcctacctctcaatgtatataat |
4673856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 4638349 - 4638300
Alignment:
| Q |
71 |
tattctttagtatggttttgaattataaaacagaaatgagagttttccta |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4638349 |
tattctttcgtatggttttgaattataaaacagaaatgaaagttttccta |
4638300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University