View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_high_24 (Length: 288)
Name: NF20028_high_24
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_high_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 47219636 - 47219338
Alignment:
| Q |
1 |
tagcttttaaaaacagattgggaggaggagatcaagaagatgaagaactaaaagcatgagattgagaacttataacctccattttcaacatagtttgatg |
100 |
Q |
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| T |
47219636 |
tagcttttaaaaacagattgggaggaggagatcaagaagatgaagaactaaaagcatgagattgagaacttataacctccattttcaacatagtttgatg |
47219537 |
T |
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| Q |
101 |
attatcgattctcctgactttacaaaccatgaaacaactttccttttaaaccatgtacttcgattcttgcatacgaaataccaccacaaaaggacaaaac |
200 |
Q |
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| T |
47219536 |
atcatcgattctcctgactttacaaaccatgaaacaactttccttttaaaccatgtacttcgattcttgcatacagaataccactacaaaaggataaaac |
47219437 |
T |
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| Q |
201 |
aagatcaaaactatgacacccacg-----------cagggatagttgctagccttttcaagccaataaatgaaagaaagcttatagtcctccaaattaa |
288 |
Q |
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| T |
47219436 |
aagaccaaaactatgacacccaagtatttcccctttagggatagttgctagccttttcaagccaataaatgaaagaaagctgatagtcctccaaattaa |
47219338 |
T |
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