View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20028_high_3 (Length: 622)

Name: NF20028_high_3
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20028_high_3
NF20028_high_3
[»] chr1 (6 HSPs)
chr1 (18-612)||(33411905-33412499)
chr1 (412-589)||(15729630-15729807)
chr1 (399-587)||(15766204-15766392)
chr1 (414-589)||(15737235-15737410)
chr1 (398-585)||(15755334-15755521)
chr1 (417-578)||(15779337-15779498)
[»] chr2 (1 HSPs)
chr2 (93-210)||(36292567-36292683)
[»] chr8 (2 HSPs)
chr8 (91-161)||(28610040-28610110)
chr8 (105-161)||(11792036-11792092)
[»] chr6 (1 HSPs)
chr6 (107-165)||(28089118-28089176)
[»] chr5 (3 HSPs)
chr5 (107-161)||(6798204-6798258)
chr5 (89-130)||(30526190-30526231)
chr5 (89-130)||(30566530-30566571)
[»] chr4 (1 HSPs)
chr4 (113-200)||(12908386-12908474)
[»] chr7 (1 HSPs)
chr7 (168-217)||(5008524-5008573)


Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Complemental strand, 33412499 - 33411905
Alignment:
Q  18 catctctacttgacggatgtaattttactttgagaaatggtttttggacaactagttttagacagcttccacaacaactttttaaggggttaacacagtt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33412499 catctctacttgacggatgtaattttactttgagaaatggtttttggacaactagttttagacaacttccacaacaactttttaaggggttaacacagtt 33412400  T
Q  118 caaataggtggttgattatgtttaatagatggttaatgtatataacaatcatcaaaactcattaactatcaacgtaacttcattaaccacaaacttggac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33412399 caaataggtggttgattatgtttaatagatggttaatgtatataacaagcatcaaaactcattaactatcaatgtaacttcattaaccacaaacttggac 33412300  T
Q  218 acatttttcagacgttcaaatctacaaccacgtgaaccccttaaaaaactatagtgaaagttgtcaaatcttagttgttcaaataacacgactctgttat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33412299 acatttttcagacgttcaaatctacaaccacgtgaaccccttaaaaaactatagtgaaagttgtcaaatcttagttgttcaaataacacgactctgttac 33412200  T
Q  318 ttttgtgatacaatttcatattttaatttattatttaggttcctagacaaggcaagtgtcaaaacaggctcaactagtccatggatgttatgcacagtta 417  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33412199 ttttgtgatgcaatttcatatattaatttattatttaggttcctagacaaggcaagtgtcaaaacaggctcaactagtccatggatgttatgcacagtta 33412100  T
Q  418 cacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgt 517  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33412099 cacatgtagaagagacaaaacaaatgctaaggatgattccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgt 33412000  T
Q  518 aaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgtcacattgtctttgcttgtctgtg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33411999 aaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgtcacattgtccttgcttgtctgtg 33411905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 412 - 589
Target Start/End: Original strand, 15729630 - 15729807
Alignment:
Q  412 cagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccct 511  Q
    |||||||||||||||| ||||| ||||||||| |||| ||||| |||||| ||| | |||||||  |||| ||||||||||| |||||| |||| ||  |    
T  15729630 cagttacacatgtagaggagaccaaacaaatgataagaatgatcccaatcatggctactacattaattcctagtacaatgattgctcaaataaatacatt 15729729  T
Q  512 ttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgt 589  Q
     ||||| |||||||||||||||||||| |||  |||||| || ||||||||||||||||||||||||| | |||||||    
T  15729730 gtttgtgaaacaaggaacaacacttgatagaggcattgggagtttcaaaattccaccagcaagtttaggtacatttgt 15729807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 399 - 587
Target Start/End: Original strand, 15766204 - 15766392
Alignment:
Q  399 tggatgttatgcacagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctc 498  Q
    ||||||||||||||||| ||||| || ||||| || |||||||| || ||  |  | || || | |||||| |||||| |||||||| ||||||| ||||    
T  15766204 tggatgttatgcacagtaacacaagtggaagaaaccaaacaaatccttagcttagtccctatttgggttgcaacatttattccaagtgcaatgatagctc 15766303  T
Q  499 aagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcattt 587  Q
    || |||| ||||||||||||||||||||||| || ||| |||||  |||||| | |||| | ||||||||| |||||||||||||||||    
T  15766304 aaataaataccctttttgtaaaacaaggaactactcttaacagatccattggcaacttccatattccaccatcaagtttagctgcattt 15766392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 414 - 589
Target Start/End: Original strand, 15737235 - 15737410
Alignment:
Q  414 gttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacacccttt 513  Q
    |||||||| ||||| ||||| |||||||||||||| ||||| ||||| || | | | |||||  |||| ||||||||| | |||||| |||| || || |    
T  15737235 gttacacacgtagaggagaccaaacaaatgctaagaatgatcccaattttagctacaacattaattcctagtacaatggttgctcaaataaatacactct 15737334  T
Q  514 ttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgt 589  Q
    |||| || ||||||||||||||||| ||| ||||||| || ||| ||||||||||||||||||||| | |||||||    
T  15737335 ttgtgaagcaaggaacaacacttgatagagacattgggagtttccaaattccaccagcaagtttaggtacatttgt 15737410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 398 - 585
Target Start/End: Original strand, 15755334 - 15755521
Alignment:
Q  398 atggatgttatgcacagttacacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggct 497  Q
    |||||||||||||||| | ||||| ||||| || || |||||||| || ||  | ||||| || | |||||| |||||| |||||||| ||||||| |||    
T  15755334 atggatgttatgcacaataacacaagtagaggaaaccaaacaaatccttagcttaatacctatttgggttgccacatttattccaagtgcaatgattgct 15755433  T
Q  498 caagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcat 585  Q
    ||| |||| ||||||||  ||||||||||||| || ||| |||||  |||||| | ||| ||| |||| |||||||||||| ||||||    
T  15755434 caaataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcat 15755521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 578
Target Start/End: Original strand, 15779337 - 15779498
Alignment:
Q  417 acacatgtagaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttg 516  Q
    ||||| ||||| ||||| |||||||| |||||  | || || || | ||||||||||||| |||| ||| ||||||| |||||  |||| ||| | ||||    
T  15779337 acacaagtagaggagaccaaacaaatcctaagtgtaatccctatttgggttgctacatttattcctagtgcaatgattgctcagataaataccttgtttg 15779436  T
Q  517 taaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagttta 578  Q
    |||| |||||| | ||||| ||||||  |||||| | |||| | ||||| ||| ||||||||    
T  15779437 taaagcaaggatctacactcgacagagccattggcaacttcgatattcctccatcaagttta 15779498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 36292567 - 36292683
Alignment:
Q  93 aactttttaaggggttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatataacaatcatcaaaactcattaactatcaacgt 192  Q
    ||||||||||| | |||| ||  ||||||||||| ||| |||| ||| | ||||||||||||| |||||  | |  ||||||||||||||| ||| ||||    
T  36292567 aactttttaagtgattaatacccttcaaataggtagttaattacgttcagtagatggttaatggatatactagtg-tcaaaactcattaaccatcgacgt 36292665  T
Q  193 aacttcattaaccacaaa 210  Q
    ||||||||||||||||||    
T  36292666 aacttcattaaccacaaa 36292683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 28610110 - 28610040
Alignment:
Q  91 acaactttttaaggggttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatata 161  Q
    ||||||||||||| ||||||  |||||||||||||||||| |||||||||| ||||| || |||| |||||    
T  28610110 acaactttttaagtggttaagtcagttcaaataggtggttaattatgtttagtagatagtcaatggatata 28610040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 11792036 - 11792092
Alignment:
Q  105 ggttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatata 161  Q
    |||||||||| |||| ||| ||||||||||||| | |||| |||||||||| |||||    
T  11792036 ggttaacacaattcacatatgtggttgattatggtcaatacatggttaatgaatata 11792092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 28089118 - 28089176
Alignment:
Q  107 ttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatataacaa 165  Q
    ||||| |||||||||||  ||||| |||||||||| ||||||||||||| |||||||||    
T  28089118 ttaacgcagttcaaatacatggttaattatgtttagtagatggttaatggatataacaa 28089176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 6798204 - 6798258
Alignment:
Q  107 ttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatata 161  Q
    ||||||||||| |||||||||||| |||||||||  |||||| ||||||||||||    
T  6798204 ttaacacagttgaaataggtggttaattatgtttggtagatgattaatgtatata 6798258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 30526231 - 30526190
Alignment:
Q  89 caacaactttttaaggggttaacacagttcaaataggtggtt 130  Q
    ||||||||||||||| |||||||||| |||||||| ||||||    
T  30526231 caacaactttttaagtggttaacacacttcaaataagtggtt 30526190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 30566571 - 30566530
Alignment:
Q  89 caacaactttttaaggggttaacacagttcaaataggtggtt 130  Q
    ||||||||||||||| |||||||||| |||||||| ||||||    
T  30566571 caacaactttttaagtggttaacacacttcaaataagtggtt 30566530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 12908386 - 12908474
Alignment:
Q  113 cagttcaaataggtggttgattatgtttaatagatggttaatgtatataacaatcatc-aaaactcattaactatcaacgtaacttcat 200  Q
    ||||||||||| |||||| | || ||| ||||||||||||||| || ||||| |  || ||||||||||||| | ||||||||||||||    
T  12908386 cagttcaaatatgtggttaagtacgttcaatagatggttaatggatgtaacagttgtcaaaaactcattaaccaccaacgtaacttcat 12908474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 5008524 - 5008573
Alignment:
Q  168 atcaaaactcattaactatcaacgtaacttcattaaccacaaacttggac 217  Q
    ||||||||||||| || |||||||||| ||||||||||| ||| ||||||    
T  5008524 atcaaaactcattgacaatcaacgtaatttcattaaccaaaaatttggac 5008573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University