View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_high_32 (Length: 238)
Name: NF20028_high_32
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37245684 - 37245463
Alignment:
| Q |
1 |
catggaaattcaaagaaagcttcaaggtagatgacgaagatcgttgaaaaaagcaagaaacacaaattacgtgcaattgcagaaaaagaaggaaattgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245684 |
catggaaattcaaagaaagcttcaaggtagatgacgaagatcgttgaaaaaagcaagaaacacaaattacgtgcaattgcagaaaaagaaggaaattgta |
37245585 |
T |
|
| Q |
101 |
gagtgaatcaaggagattccaccaaaagttgcagaaaaacgcaagagaaaacaaaagtgtgagccaattcacgaaagactcacgataccagggaaattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37245584 |
gagtgaatcaaggagattccaccaaaagttgcagtaaaacgcaagagaaaacaaaagtgtgagccaattcacgaaagactcacgataccatggaaattaa |
37245485 |
T |
|
| Q |
201 |
aacaccagtacagatacctaat |
222 |
Q |
| |
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|||||| ||||||||| ||||| |
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|
| T |
37245484 |
aacaccggtacagatagctaat |
37245463 |
T |
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