View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20028_high_33 (Length: 233)

Name: NF20028_high_33
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20028_high_33
NF20028_high_33
[»] chr4 (2 HSPs)
chr4 (18-218)||(44933845-44934045)
chr4 (18-223)||(46604538-46604743)
[»] chr3 (2 HSPs)
chr3 (18-223)||(38825608-38825813)
chr3 (26-223)||(11525082-11525279)
[»] chr1 (1 HSPs)
chr1 (18-223)||(17881511-17881716)
[»] chr7 (2 HSPs)
chr7 (34-120)||(26083091-26083177)
chr7 (34-120)||(26106878-26106964)
[»] chr6 (3 HSPs)
chr6 (34-120)||(4502475-4502561)
chr6 (34-120)||(15826027-15826113)
chr6 (34-95)||(34312021-34312082)
[»] chr5 (2 HSPs)
chr5 (34-120)||(548680-548766)
chr5 (34-120)||(30279092-30279178)
[»] scaffold1049 (1 HSPs)
scaffold1049 (34-95)||(232-293)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 44933845 - 44934045
Alignment:
Q  18 cctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  44933845 cctatcagatctccttcttcagtttattgtgacaatgcatcagcgatttatcttgctcataatcctacctttcatgagtgtataaagcatattgagattg 44933944  T
Q  118 attaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttca 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  44933945 attaccatgtaattagagaaaagattcaaaagggcaccattcacctcttatcagttccatcatcacctcaacttgctgatgtatttactaaaccccttca 44934044  T
Q  218 t 218  Q
    |    
T  44934045 t 44934045  T

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Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 46604538 - 46604743
Alignment:
Q  18 cctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattg 117  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||| ||||||||||| |    
T  46604538 cctatcaaatctccatcttcagtttattgtgacaatgcatcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatag 46604637  T
Q  118 attaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttca 217  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||| |||||    
T  46604638 attgccatgtaattagagaaaagattcaaaagggcaccattcacctattaccagttccatcatcatctcaacttgctgatgtatttactaaaccgcttca 46604737  T
Q  218 tctcac 223  Q
    | ||||    
T  46604738 tgtcac 46604743  T

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Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 38825608 - 38825813
Alignment:
Q  18 cctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattg 117  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||| ||||||||||| |    
T  38825608 cctatcaaatctccatcttcagtttattgtgacaatgcatcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatag 38825707  T
Q  118 attaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttca 217  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||| |||||    
T  38825708 attgccatgtaattagagaaaagattcaaaagggcaccattcacctattaccagttccatcatcatctcaacttgctgatgtatttactaaaccgcttca 38825807  T
Q  218 tctcac 223  Q
    | ||||    
T  38825808 tgtcac 38825813  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 11525082 - 11525279
Alignment:
Q  26 atctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgattaccat 125  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||| || ||| || ||||||| ||||| ||||    
T  11525082 atctccgtcttcagtttattgtgataatgcatcaacaatttatcttgctcataaccctacttttcatgagcgtacaaaacacattgagaatgatttccat 11525181  T
Q  126 gtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttcatctcac 223  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||| |||||||||||| ||||| |||||| ||||    
T  11525182 gtgattagagaaaagattcaaaagggcaccattcaactattaccagttccatcatcatctcaacttgctgatgtatttaccaaaccgcttcatgtcac 11525279  T

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Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 17881716 - 17881511
Alignment:
Q  18 cctatcagatctccttcttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattg 117  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||| ||||||||||| |    
T  17881716 cctatcaaatctccatcttcagtttattgtgacaatgcatcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatag 17881617  T
Q  118 attaccatgtgattagagaaaagattcaaaagggcaccattcacctcttaccagttccatcatcaccccaacttgttgatgtatttactaaaccccttca 217  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||| |||||    
T  17881616 attgccatgtaattagagaaaagattcaaaagggcaccattcacctattaccagttccatcatcatctcaacttgctgatgtatttactaaaccgcttca 17881517  T
Q  218 tctcac 223  Q
    | ||||    
T  17881516 tgtcac 17881511  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 26083177 - 26083091
Alignment:
Q  34 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 120  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  26083177 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 26083091  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 26106964 - 26106878
Alignment:
Q  34 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 120  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  26106964 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 26106878  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 4502475 - 4502561
Alignment:
Q  34 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 120  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  4502475 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 4502561  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 15826027 - 15826113
Alignment:
Q  34 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 120  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  15826027 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 15826113  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 34312021 - 34312082
Alignment:
Q  34 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgag 95  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||    
T  34312021 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgag 34312082  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 548766 - 548680
Alignment:
Q  34 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 120  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  548766 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 548680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 30279178 - 30279092
Alignment:
Q  34 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgagcttataaagcatattgagattgatt 120  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||   | ||| || |||||||||||||    
T  30279178 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgagagaacaaaacacattgagattgatt 30279092  T

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Target: scaffold1049 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 293 - 232
Alignment:
Q  34 cttcagtttattgtgacaatgcatcagcaatttatcttgctcataatcctacctttcatgag 95  Q
    ||||||| ||||||||||||  |||||| || ||||||||||||||||| || |||||||||    
T  293 cttcagtatattgtgacaataaatcagccatatatcttgctcataatccaacatttcatgag 232  T

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