View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_high_36 (Length: 211)
Name: NF20028_high_36
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 9379814 - 9379638
Alignment:
| Q |
17 |
aatatagttgaaatgaaagaatcccatttgaaagcaattttgcttaagnnnnnnnttgtattgttaaaagaagtagaaatacttacactgatgcttccat |
116 |
Q |
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| T |
9379814 |
aatatagttgaaatgaaagaatcccatttgaaagtaattttgcttaataaaaaaattgtattgttaaaagaagtagaaatacttacactgatgcttccat |
9379715 |
T |
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| Q |
117 |
caccaacaaggccatggaacaaaactccccatccaggtaagtcatctgatattcttcttgtcatccatagtactatc |
193 |
Q |
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| T |
9379714 |
caccaacaaggccatggaacaaaactccccatccaggtaagtcatctgatattcttcttgtcatccatagtactatc |
9379638 |
T |
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 55738641 - 55738552
Alignment:
| Q |
96 |
tacttacactgatgcttccatcaccaacaaggccatggaacaaaactccccatccaggtaagtcatctgatattcttcttgtcatccata |
185 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||| ||||||||| || | |||||||| || |||||||||||||||| |
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| T |
55738641 |
tacttacactgacacttccatcaccaacaaggccatggaaaaaagttccccatccgggaatgtcatctgtgatccttcttgtcatccata |
55738552 |
T |
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