View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20028_low_1 (Length: 824)
Name: NF20028_low_1
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 8e-91; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 632 - 813
Target Start/End: Complemental strand, 20139427 - 20139246
Alignment:
| Q |
632 |
aggatttgctacatcctctatgcataaatgcgccttgcaaaatggtagaccaaagtcttaacatctttagggttgtggttttcttgggatatcctggtat |
731 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20139427 |
aggatttgctacatcctctatgcataaatgcgccttgcaaaatggtagaccaaagtcttaacatctttagggttgtggttttcttcggatatcctggtat |
20139328 |
T |
|
| Q |
732 |
gagaacatcatacttgggcaaaatattgagatcttgtcaacaataggtgtcctgttgtagttaacatgtagtgtcgttctct |
813 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20139327 |
gagaacatcatacttgggcaaaatatcgagatcttgtcaacaataggtgtccggttgtagttaacatgtagtgtcgttctct |
20139246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 20140213 - 20139921
Alignment:
| Q |
16 |
cacgttgattagggaagcaagaattagtactgattatttatttctat-ctggataatgatattgctatctatagaatccaatctttaataacatagtcct |
114 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||||| |||||| | |||||||||||||| ||| |
|
|
| T |
20140213 |
cacgttgattagggaaccaagaattattactgattatttatttctatactgggcaatgatattgctat----agaatctactctttaataacataaccct |
20140118 |
T |
|
| Q |
115 |
catgttacctgttg---tgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaacgttgattagttcatcagctagcatagatt |
211 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
20140117 |
catgtcacctgtgggattgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaacgttg--------atcagctagcagagatt |
20140026 |
T |
|
| Q |
212 |
catgaactgttgttctctttggtgtgagcttccagtggccgcggttggcattggtgtgtggtagaatgttgtttcaagctggtggtggagtttgtatttt |
311 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20140025 |
catgaacaattgttctctttggtgtgagcttccaatggccgcggttaccattggtgtgtggtagcatgttgtttcaagctggtgatggagtttgtatttt |
20139926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 20132988 - 20132798
Alignment:
| Q |
16 |
cacgttgattagggaagcaagaattagtactgattatttattt-----ctatct-ggataatgatattgctatctatagaatccaatctttaataacata |
109 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||||||| |||| | |||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
20132988 |
cacgtagattagggaagcaagaattattatggattatttatttaatttctatattggataatgatattgctat----agaatccaacctttaataacata |
20132893 |
T |
|
| Q |
110 |
gtcctcatgttacctgttgtgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaacgttgattagttcatcagctagcat |
206 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||| | ||||||| |
|
|
| T |
20132892 |
gccctcatgttacattttgtgtagggttgtattcatgggagcacaattgaaggttgttgcag--aacttcaacgttgataagctcattaactagcat |
20132798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 423 - 522
Target Start/End: Complemental strand, 20139887 - 20139786
Alignment:
| Q |
423 |
atctatctgctagtgcagagttgctgtatctttccgtacttt--ctggagtatgctttgtacttcaagtaaaccgttctaataaattcattttccctttc |
520 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20139887 |
atctatctgctagtgcagaattgttgtatctttccgcactttatctcgagtatgctttgtacttcaagtaaaccgttctaataaattcattttccctttc |
20139788 |
T |
|
| Q |
521 |
at |
522 |
Q |
| |
|
|| |
|
|
| T |
20139787 |
at |
20139786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 20373832 - 20373765
Alignment:
| Q |
86 |
tagaatccaatctttaataacatagtcctcatgttacctgttgtgtagggttgtattcatgggagcac |
153 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
20373832 |
tagaatctaatctttaataacatagccctcatgttacctgtggtgtagggttgtattcatggcagcac |
20373765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 20423397 - 20423533
Alignment:
| Q |
19 |
gttgattagggaagcaagaattagtactgattatttatttctatctggataatgatattgctatctatagaatccaatctttaataacatagtcctcatg |
118 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||| | || ||||||||| ||||||||| |||||| |||||||||||||| || |||||| |
|
|
| T |
20423397 |
gttgattggggaagcaagaattattactcattatttacgtgtaa-tggataatggtattgctat----agaatctaatctttaataacacagccctcatt |
20423491 |
T |
|
| Q |
119 |
ttacctgttgtgtagggttgtattcatgggagcacaattgaa |
160 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||| |||||| |
|
|
| T |
20423492 |
ttacctgtgatgtaggtttgtattcatgtcagcacgattgaa |
20423533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 20442464 - 20442586
Alignment:
| Q |
19 |
gttgattagggaagcaagaattagtactgattatttatttctatctggataatgatattgctatctatagaatccaatctttaataacatagtcctcatg |
118 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| | || |||| ||||| ||||| |||||||||| |||||||||||||| || || ||| |
|
|
| T |
20442464 |
gttgattagggaagcaagaattattactcattatttatgtgta-ctggttaatggtattg----ctatagaatctaatctttaataacacagcccacatt |
20442558 |
T |
|
| Q |
119 |
ttacctgttgtgtagggttgtattcatg |
146 |
Q |
| |
|
|||||| | |||||| ||||||||||| |
|
|
| T |
20442559 |
ttacctatgatgtaggtttgtattcatg |
20442586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 595
Target Start/End: Complemental strand, 20139758 - 20139713
Alignment:
| Q |
550 |
ttggtttcaatttagttttcttaatcattgattcattctttataga |
595 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20139758 |
ttggtttcaatttagttttcttaatcatagattcattctttataga |
20139713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 20407840 - 20407923
Alignment:
| Q |
19 |
gttgattagggaagcaagaattagtactgattatttatttctatctggataatgatattgctatctatagaatccaatctttaataaca |
107 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| | || ||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
20407840 |
gttgattagggaagcaagaattattactcattatttatgtgta-ctggataatagtattg----ctatagaatctaatctttaataaca |
20407923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 20339679 - 20339772
Alignment:
| Q |
95 |
atctttaataacatagtcctc--atgttacctgttgtgtagggttgtattcatgggagcacaattgaaggttactgcagcacacttcaacgttg |
186 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| | ||||||||||||||| | || ||||| ||||||||| |||||| || |||||||||| |
|
|
| T |
20339679 |
atctttaataacatagccctcgtatgttacctttggtgtagggttgtattgagggcagcacggttgaaggttgttgcagcccagttcaacgttg |
20339772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University