View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20028_low_12 (Length: 425)

Name: NF20028_low_12
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20028_low_12
NF20028_low_12
[»] chr7 (29 HSPs)
chr7 (13-420)||(3241111-3241518)
chr7 (94-165)||(7244627-7244698)
chr7 (96-207)||(45593795-45593905)
chr7 (110-166)||(46213727-46213783)
chr7 (96-165)||(9527166-9527235)
chr7 (99-168)||(30496626-30496695)
chr7 (96-164)||(24973870-24973938)
chr7 (96-164)||(33894549-33894616)
chr7 (96-165)||(19624151-19624220)
chr7 (96-165)||(35536032-35536101)
chr7 (100-165)||(47004012-47004077)
chr7 (100-163)||(3610820-3610883)
chr7 (96-143)||(5006585-5006632)
chr7 (110-173)||(5373142-5373205)
chr7 (107-189)||(1431395-1431477)
chr7 (107-165)||(49060465-49060523)
chr7 (100-137)||(9872824-9872861)
chr7 (96-133)||(17989099-17989136)
chr7 (96-165)||(27121662-27121731)
chr7 (95-144)||(30160965-30161014)
chr7 (104-165)||(31341119-31341180)
chr7 (107-152)||(42656453-42656498)
chr7 (98-158)||(5276156-5276216)
chr7 (96-159)||(5369767-5369828)
chr7 (96-156)||(12835013-12835073)
chr7 (129-173)||(27389300-27389344)
chr7 (96-168)||(27492717-27492789)
chr7 (98-146)||(44910548-44910596)
chr7 (113-165)||(45078218-45078270)
[»] chr5 (25 HSPs)
chr5 (96-207)||(20982211-20982322)
chr5 (94-164)||(7096201-7096271)
chr5 (96-173)||(35135738-35135815)
chr5 (101-165)||(35095864-35095928)
chr5 (96-163)||(37063150-37063217)
chr5 (96-142)||(14295454-14295500)
chr5 (113-207)||(26516181-26516275)
chr5 (96-172)||(11684341-11684415)
chr5 (96-165)||(28586842-28586911)
chr5 (100-165)||(31694443-31694508)
chr5 (97-165)||(6738484-6738552)
chr5 (99-167)||(38831535-38831603)
chr5 (96-159)||(9202824-9202887)
chr5 (114-161)||(29588809-29588856)
chr5 (89-163)||(37611262-37611334)
chr5 (89-163)||(37787992-37788064)
chr5 (96-178)||(36539658-36539740)
chr5 (104-165)||(1961917-1961978)
chr5 (100-165)||(13224354-13224419)
chr5 (96-165)||(19177404-19177473)
chr5 (98-143)||(39941788-39941833)
chr5 (107-175)||(912736-912804)
chr5 (104-188)||(6739774-6739858)
chr5 (97-165)||(12407738-12407805)
chr5 (99-139)||(29117009-29117049)
[»] chr4 (31 HSPs)
chr4 (88-165)||(4191664-4191742)
chr4 (98-163)||(47970245-47970310)
chr4 (96-165)||(54325113-54325182)
chr4 (75-158)||(51044513-51044597)
chr4 (94-163)||(7022595-7022664)
chr4 (99-160)||(20907103-20907164)
chr4 (97-214)||(21157644-21157761)
chr4 (96-165)||(36734818-36734887)
chr4 (96-165)||(44319875-44319943)
chr4 (93-189)||(7342091-7342187)
chr4 (96-212)||(22684592-22684708)
chr4 (97-165)||(24160572-24160640)
chr4 (96-196)||(24443932-24444032)
chr4 (95-159)||(35411087-35411151)
chr4 (96-207)||(49219022-49219133)
chr4 (96-165)||(2980542-2980616)
chr4 (96-162)||(4071811-4071876)
chr4 (97-143)||(7029370-7029416)
chr4 (108-165)||(969433-969490)
chr4 (96-161)||(4191546-4191611)
chr4 (96-165)||(5219576-5219645)
chr4 (94-143)||(7731717-7731766)
chr4 (96-165)||(19422343-19422412)
chr4 (95-140)||(24929443-24929488)
chr4 (96-165)||(30024625-30024694)
chr4 (96-165)||(30207647-30207715)
chr4 (100-161)||(46019706-46019767)
chr4 (76-165)||(51555924-51556012)
chr4 (116-161)||(55994283-55994328)
chr4 (109-165)||(8422926-8422982)
chr4 (129-173)||(9843775-9843819)
[»] chr3 (22 HSPs)
chr3 (98-182)||(41028929-41029013)
chr3 (96-165)||(38462206-38462275)
chr3 (88-165)||(44284126-44284203)
chr3 (97-165)||(51278234-51278302)
chr3 (96-162)||(49586992-49587057)
chr3 (96-165)||(44374720-44374789)
chr3 (94-158)||(3757980-3758044)
chr3 (96-158)||(20192682-20192744)
chr3 (95-165)||(40122827-40122897)
chr3 (96-165)||(22232751-22232820)
chr3 (96-165)||(27792797-27792866)
chr3 (96-165)||(33307656-33307725)
chr3 (113-165)||(16790181-16790233)
chr3 (89-165)||(16790425-16790501)
chr3 (94-165)||(48528503-48528574)
chr3 (110-165)||(48588590-48588645)
chr3 (108-166)||(905058-905116)
chr3 (131-165)||(20502187-20502221)
chr3 (96-157)||(1395604-1395665)
chr3 (96-173)||(3182438-3182515)
chr3 (96-165)||(32703063-32703132)
chr3 (107-143)||(34318035-34318071)
[»] chr8 (27 HSPs)
chr8 (100-165)||(35534941-35535006)
chr8 (74-165)||(40280259-40280350)
chr8 (96-165)||(3645892-3645961)
chr8 (100-189)||(14482103-14482192)
chr8 (99-182)||(6918258-6918341)
chr8 (75-165)||(34563175-34563265)
chr8 (96-163)||(8536125-8536191)
chr8 (119-165)||(8629034-8629080)
chr8 (94-160)||(14929190-14929256)
chr8 (97-211)||(29699133-29699247)
chr8 (103-173)||(39392744-39392814)
chr8 (103-207)||(11119082-11119186)
chr8 (96-196)||(35869731-35869831)
chr8 (107-163)||(40356798-40356854)
chr8 (89-164)||(8194007-8194082)
chr8 (98-165)||(35298556-35298623)
chr8 (97-160)||(42597331-42597394)
chr8 (75-165)||(20672697-20672787)
chr8 (96-141)||(27728097-27728142)
chr8 (96-165)||(33209296-33209365)
chr8 (100-165)||(40728498-40728563)
chr8 (109-165)||(8823482-8823538)
chr8 (99-187)||(10079142-10079230)
chr8 (99-159)||(26215427-26215487)
chr8 (98-158)||(29973013-29973073)
chr8 (97-165)||(34770817-34770885)
chr8 (94-182)||(43907873-43907961)
[»] chr6 (27 HSPs)
chr6 (100-165)||(24774683-24774748)
chr6 (96-182)||(10452436-10452522)
chr6 (95-173)||(8470063-8470141)
chr6 (96-166)||(10154145-10154215)
chr6 (105-182)||(2514610-2514687)
chr6 (96-165)||(13360660-13360729)
chr6 (107-163)||(4248885-4248941)
chr6 (101-163)||(32975905-32975967)
chr6 (96-165)||(3217266-3217335)
chr6 (96-165)||(7351684-7351753)
chr6 (100-161)||(9027506-9027567)
chr6 (96-165)||(29274305-29274374)
chr6 (100-165)||(32386179-32386244)
chr6 (89-165)||(31672537-31672613)
chr6 (96-183)||(3204618-3204705)
chr6 (98-189)||(33068639-33068730)
chr6 (95-165)||(4247710-4247779)
chr6 (103-165)||(8420280-8420342)
chr6 (99-165)||(9833176-9833242)
chr6 (89-150)||(2205637-2205698)
chr6 (96-165)||(22742291-22742360)
chr6 (74-143)||(31583648-31583717)
chr6 (124-165)||(31668789-31668830)
chr6 (96-165)||(32386639-32386708)
chr6 (100-161)||(34405034-34405095)
chr6 (113-165)||(1810393-1810445)
chr6 (122-174)||(29249390-29249442)
[»] chr2 (29 HSPs)
chr2 (96-165)||(17952777-17952846)
chr2 (96-165)||(28803582-28803651)
chr2 (94-158)||(7282950-7283014)
chr2 (94-154)||(32098382-32098442)
chr2 (107-166)||(31461362-31461421)
chr2 (96-157)||(33192126-33192187)
chr2 (96-165)||(37053519-37053588)
chr2 (96-163)||(3673734-3673801)
chr2 (108-159)||(25609727-25609778)
chr2 (97-160)||(35755579-35755642)
chr2 (96-165)||(18884806-18884876)
chr2 (96-166)||(33944529-33944599)
chr2 (100-165)||(3102618-3102683)
chr2 (96-165)||(18962114-18962183)
chr2 (108-165)||(33197327-33197384)
chr2 (96-165)||(33267592-33267661)
chr2 (100-159)||(10143103-10143162)
chr2 (96-159)||(34054977-34055040)
chr2 (90-165)||(37033969-37034044)
chr2 (100-154)||(9878762-9878816)
chr2 (96-161)||(11344360-11344425)
chr2 (96-165)||(14209202-14209271)
chr2 (101-161)||(3235464-3235523)
chr2 (96-156)||(5511499-5511559)
chr2 (100-152)||(9551517-9551569)
chr2 (114-182)||(9886215-9886283)
chr2 (101-165)||(27288558-27288622)
chr2 (96-143)||(33526043-33526093)
chr2 (110-182)||(37845442-37845514)
[»] chr1 (30 HSPs)
chr1 (96-165)||(45107548-45107616)
chr1 (100-162)||(46499934-46499996)
chr1 (77-173)||(23373347-23373443)
chr1 (74-152)||(50319230-50319308)
chr1 (104-165)||(30259571-30259632)
chr1 (99-165)||(48282058-48282125)
chr1 (96-158)||(45804209-45804271)
chr1 (96-165)||(23895261-23895330)
chr1 (88-165)||(38651477-38651554)
chr1 (96-152)||(35080146-35080202)
chr1 (96-139)||(15360845-15360888)
chr1 (98-165)||(15437888-15437955)
chr1 (96-163)||(17269177-17269244)
chr1 (88-143)||(26293174-26293229)
chr1 (74-165)||(42550166-42550257)
chr1 (96-159)||(45999364-45999427)
chr1 (89-139)||(14737774-14737824)
chr1 (97-173)||(17631178-17631247)
chr1 (107-165)||(36641800-36641858)
chr1 (96-165)||(1255507-1255576)
chr1 (96-165)||(4200154-4200223)
chr1 (96-173)||(7274015-7274092)
chr1 (88-173)||(40357954-40358039)
chr1 (96-165)||(44032075-44032144)
chr1 (89-165)||(4202198-4202274)
chr1 (96-164)||(6933037-6933105)
chr1 (96-159)||(14741459-14741523)
chr1 (99-143)||(15687152-15687196)
chr1 (96-164)||(43333625-43333693)
chr1 (89-165)||(48748652-48748727)
[»] scaffold0590 (1 HSPs)
scaffold0590 (96-165)||(1150-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (96-165)||(2756-2825)
[»] scaffold0072 (1 HSPs)
scaffold0072 (96-165)||(4897-4966)
[»] scaffold0654 (1 HSPs)
scaffold0654 (96-165)||(6713-6782)
[»] scaffold0024 (1 HSPs)
scaffold0024 (96-165)||(27501-27570)
[»] scaffold0014 (1 HSPs)
scaffold0014 (96-165)||(116632-116701)
[»] scaffold0110 (2 HSPs)
scaffold0110 (96-163)||(4299-4367)
scaffold0110 (131-211)||(34023-34103)
[»] scaffold0508 (1 HSPs)
scaffold0508 (96-165)||(9851-9920)


Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 3241518 - 3241111
Alignment:
Q  13 aatatgatctataattctaaacattgtcttgcgtagaaaatgttctgaaaatctgtacacaccataagctcttttggatatcttatgaaaacagtttgac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3241518 aatatgatctataattctaaacattgtcttgcgtagaaaatgttctgaaaatctgtacacaccataagctcttttggatatcttatgaaaacagtttgac 3241419  T
Q  113 tttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagttacttatccaaatagac 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3241418 tttattttttattttgttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagttacttatccaaacagac 3241319  T
Q  213 cctaatggtggaatgtcaaaatacatttagtagtatcagtagtcaaaagtgttacaccatgatgttaaaaagcaaaatcctttgaagtttagaatttatg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3241318 cctaatggtggaatgtcaaaatacatttagtagtatcagtagtcaaaagtgttacaccatgatgttaaaaagcaaaatcctttgaagtttagaatttatg 3241219  T
Q  313 ctcaaacagttaaattcattacctccatgaacactattgaactcatcatctgaatcagaatccagaatactgactgaatcaaagtaactctcatcttggc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3241218 ctcaaacagttaaattcattacctccatgaacactattgaactcatcatctgaatcagaatccagaatactgactgaatcaaagtaactctcatcttggc 3241119  T
Q  413 acattact 420  Q
    ||||||||    
T  3241118 acattact 3241111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 7244698 - 7244627
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||||||||| |||| | ||||  |||||||||||||| || ||||||||||||||||||    
T  7244698 cttatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgata 7244627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 45593795 - 45593905
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagt 195  Q
    ||||||||||||||||||||||||| | |||| ||| ||||||||||| || ||||||| ||||||||||  | ||||| | ||||||||||||  |||     
T  45593795 tatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataaactcttac-acataagcacttaattaagc 45593893  T
Q  196 tacttatccaaa 207  Q
    || |||||||||    
T  45593894 tatttatccaaa 45593905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 46213783 - 46213727
Alignment:
Q  110 gactttattttttattttcttatagaaatagcttctatataagcacttatatgatat 166  Q
    ||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||    
T  46213783 gactttattttatattttgttatagaaatagcttttacataagcacttatatgatat 46213727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 9527166 - 9527235
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||||||||| | | |||| ||||||| ||||| | ||||||||||||| |||||||    
T  9527166 tatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgata 9527235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 30496695 - 30496626
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgc 168  Q
    ||||||| |||||||||||||| |||||| |||||||||||| || || |||| ||||||| ||||||||    
T  30496695 gaaaacaatttgactttattttatattttgttatagaaatagtttatacataaacacttatgtgatatgc 30496626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 24973938 - 24973870
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgat 164  Q
    |||| ||||| ||||| |||||||| | |||| ||||||||||||||| || |||||||||||||||||    
T  24973938 tatggaaacaatttgaatttattttatcttttgttatagaaatagcttttacataagcacttatatgat 24973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 33894616 - 33894549
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgat 164  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||||| || ||||||||||| |||||    
T  33894616 tatgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacataagcacttacatgat 33894549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 19624220 - 19624151
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| ||||| ||||||||||   || ||||||||||||| ||| ||||||||| |||||||||||    
T  19624220 tatgaaaatagttttactttattttgccttatcttatagaaatatcttatatataagcccttatatgata 19624151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 35536101 - 35536032
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||||||||| | || | ||||||||||||||| || ||||||  ||||||||||    
T  35536101 tatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgata 35536032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 47004077 - 47004012
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| |||||||||||||||| | | || |||||||||||||||  |||||| |||||||||||||    
T  47004077 aaaatagtttgactttattttatctattgttatagaaatagcttacatataaacacttatatgata 47004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 3610820 - 3610883
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    ||||||||||| ||| ||||| | |||| || |||||||||||| || ||||||||||||||||    
T  3610820 aaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatga 3610883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 5006585 - 5006632
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagctt 143  Q
    ||||||||||||||||||||||||| | |||| |||||| ||||||||    
T  5006585 tatgaaaacagtttgactttattttatcttttgttataggaatagctt 5006632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 5373205 - 5373142
Alignment:
Q  110 gactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    ||||||||||| | |||| ||||||||||||| | || ||||||||||| |||||| |||||||    
T  5373205 gactttattttatcttttgttatagaaatagcatatacataagcacttacatgataagcactta 5373142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 1431395 - 1431477
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaa 189  Q
    |||||||||||||| | |||  |||| |||||| ||| || |||| ||||||||||||| ||||||| | |||||| ||||||    
T  1431395 tttgactttattttatttttcattatggaaataacttatacataaacacttatatgataagcacttatgctataagaacttaa 1431477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 49060523 - 49060465
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||| | |||| ||||||||||||||| || ||||  ||||||||||||    
T  49060523 tttgactttattttattttttgttatagaaatagcttatacataaatacttatatgata 49060465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 9872861 - 9872824
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaa 137  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  9872861 aaaacagtttgactttattttatattttgttatagaaa 9872824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 17989099 - 17989136
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttata 133  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  17989099 tatgaaaacagtttgactttattttatattttgttata 17989136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 27121662 - 27121731
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||||||||| |  ||| ||||||||||| ||| || ||||| | ||||||||||    
T  27121662 tatgaaaacaatttgactttattttatcatttattatagaaatatcttatacataaggaattatatgata 27121731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 30160965 - 30161014
Alignment:
Q  95 ttatgaaaacagtttgactttattttttattttcttatagaaatagcttc 144  Q
    |||||||||||||||||||||||||| | ||||   ||||||||||||||    
T  30160965 ttatgaaaacagtttgactttattttatcttttgccatagaaatagcttc 30161014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 31341180 - 31341119
Alignment:
Q  104 cagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||| | |||| ||||| ||||||||| || ||||||| ||| ||||||    
T  31341180 cagtttgactttattttatcttttgttatacaaatagcttatacataagcatttagatgata 31341119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 42656498 - 42656453
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagcttctatataag 152  Q
    |||||||||||||| | |||| ||||||||||||||| ||||||||    
T  42656498 tttgactttattttatcttttgttatagaaatagcttatatataag 42656453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 5276216 - 5276156
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcactta 158  Q
    ||||||| |||||||||||| || | |||| ||||| ||||||||| || |||||||||||    
T  5276216 tgaaaacggtttgactttatgttatcttttgttataaaaatagcttatacataagcactta 5276156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 5369767 - 5369828
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttat 159  Q
    |||||||||||||||||||||||  |  |||| |||||||| |||||| || ||||||||||||    
T  5369767 tatgaaaacagtttgactttattaat--tttttttatagaattagcttatacataagcacttat 5369828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 12835013 - 12835073
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcact 156  Q
    |||||||||| |||||||||||||| | |||| || |||||||||| |||  |||||||||    
T  12835013 tatgaaaacaatttgactttattttatcttttgttgtagaaatagcatctgcataagcact 12835073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 27389344 - 27389300
Alignment:
Q  129 ttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    ||||||||||||||| || |||| ||||||||||||| |||||||    
T  27389344 ttatagaaatagcttatacataaacacttatatgataagcactta 27389300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 27492789 - 27492717
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgc 168  Q
    |||||||| ||||||| |||||||    |||| |||||||||||| || || ||||| |||||||||||||||    
T  27492789 tatgaaaaaagtttgattttatttgaacttttgttatagaaatagtttatacataagaacttatatgatatgc 27492717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 44910596 - 44910548
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagcttcta 146  Q
    |||||| |||||||||||||||| | ||||  |||||||||||||||||    
T  44910596 tgaaaaaagtttgactttattttctcttttgatatagaaatagcttcta 44910548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 45078270 - 45078218
Alignment:
Q  113 tttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||  |||| ||||| ||||||||| || ||||||||||||||||||    
T  45078270 tttatttttatttttgttataaaaatagcttatacataagcacttatatgata 45078218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 20982211 - 20982322
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagt 195  Q
    ||||||||| | ||||||||||||| |  ||| ||||||||||||||| || |||||||||||||||||| ||||||| | |||||||||||||  ||||    
T  20982211 tatgaaaacgggttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagt 20982310  T
Q  196 tacttatccaaa 207  Q
    |  |||||||||    
T  20982311 tgtttatccaaa 20982322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 7096201 - 7096271
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgat 164  Q
    ||||||||||  ||||||||||||||| | |||| ||||||||||||||| || |||||||||| ||||||    
T  7096201 cttatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 35135738 - 35135815
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    |||||||| |||||||||||||||| | |||| ||||||||||| ||| || |||| |||||||||| || |||||||    
T  35135738 tatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatatgttaagcactta 35135815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 35095864 - 35095928
Alignment:
Q  101 aaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| |||||||||||||| | |||| |||||||||||| ||  ||||||||||||||||||||    
T  35095864 aaacaatttgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgata 35095928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 37063150 - 37063217
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||||| |||||||||||||||| | |||| |||||||||||| || || ||||||| ||||||||    
T  37063150 tatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagcatttatatga 37063217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 14295500 - 14295454
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagct 142  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||    
T  14295500 tatgaaaacagtttgactttattttatcttttgttatagaaatagct 14295454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 26516275 - 26516181
Alignment:
Q  113 tttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagttacttatccaaa 207  Q
    |||||||| | |||| || |||||||||||| || |||||||||||||||||| || |||| | ||||||| |||||  |||||  |||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaa 26516181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 11684415 - 11684341
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactt 172  Q
    |||||||||||||| |||  ||||| |||||| ||||| ||||||||| || || ||||||||||||||| ||||||    
T  11684415 tatgaaaacagtttcact--attttatattttgttataaaaatagcttatacattagcacttatatgataagcactt 11684341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 28586842 - 28586911
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||  | || |||| ||| |||||||||    
T  28586842 tatgaaaacagtttgactttattttatcttttgttatagaaatagtgtatacataaccacatatatgata 28586911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 31694508 - 31694443
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||| ||| | |||| ||||||| ||||||| |  ||||||||||||||||||    
T  31694508 aaaacagtttgactttagtttatgttttgttatagacatagcttattcataagcacttatatgata 31694443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 6738484 - 6738552
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||| | |||||||||||||| | |||| |||| |||||||||| || ||||| ||||||||||||    
T  6738484 atgaaaagaatttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgata 6738552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 38831535 - 38831603
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatg 167  Q
    |||||||||||||||||||||| | |||| | | ||||||||||| ||||||| || | ||||||||||    
T  38831535 gaaaacagtttgactttattttatcttttataacagaaatagcttatatataaccattcatatgatatg 38831603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 9202824 - 9202887
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttat 159  Q
    |||||||||| ||| |||||||||| | ||||  || ||||||||||| |||||||||||||||    
T  9202824 tatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttat 9202887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 29588856 - 29588809
Alignment:
Q  114 ttattttttattttcttatagaaatagcttctatataagcacttatat 161  Q
    ||||||| |||||| ||||||||||||||| || ||||||||||||||    
T  29588856 ttattttatattttgttatagaaatagcttatacataagcacttatat 29588809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 37611262 - 37611334
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||| |||||||||||| ||||| || ||||| |  ||| ||||||||||||||| || ||||||||||||||||    
T  37611262 gatagcttatgaaaacaatttgatttgattttct--tttattatagaaatagcttttacataagcacttatatga 37611334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 37787992 - 37788064
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||| |||||||||||| ||||| || ||||| |  ||| ||||||||||||||| || ||||||||||||||||    
T  37787992 gatagcttatgaaaacaatttgatttgattttct--tttattatagaaatagcttttacataagcacttatatga 37788064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 36539740 - 36539658
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgata 178  Q
    ||||||||||| ||||||||||||| | ||||  || | |||||||||  | |||||||||||||||||| |  |||||||||    
T  36539740 tatgaaaacaggttgactttattttatcttttgataaacaaatagcttacacataagcacttatatgataagttcttacgata 36539658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 1961978 - 1961917
Alignment:
Q  104 cagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| ||||| |||||  ||||| ||||| ||||||||| |||||| ||||||||||||||    
T  1961978 cagttggacttaattttacattttgttataaaaatagcttatatataggcacttatatgata 1961917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 13224419 - 13224354
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| |||| || |||||||| | |||| ||||||||||||||| || |||||||||| |||||||    
T  13224419 aaaagagttggattttattttatcttttgttatagaaatagcttatacataagcacttctatgata 13224354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 19177473 - 19177404
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||| ||||| ||||| | || | || ||||||||| || || ||||||||||||||||||    
T  19177473 tatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcacttatatgata 19177404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 39941833 - 39941788
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagctt 143  Q
    |||||| ||||||||||||||||  ||||||||||||||| |||||    
T  39941833 tgaaaatagtttgactttattttaaattttcttatagaaacagctt 39941788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 912736 - 912804
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacg 175  Q
    |||||||||||||| |||| | ||||||||||| ||| |  |||| | ||||||||||| |||||||||    
T  912736 tttgactttattttatattgtgttatagaaataacttattcataaacgcttatatgataagcacttacg 912804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 6739858 - 6739774
Alignment:
Q  104 cagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcactta 188  Q
    ||||||||||||||||| | |||  ||||||||||  ||| || |||| | |||||||||||  | |||| ||||||||||||||    
T  6739858 cagtttgactttattttatctttatttatagaaatgacttatacataaacgcttatatgataaacgcttatgatataagcactta 6739774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 12407738 - 12407805
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| || |||||||||| | |||| ||||||||||||||| || |||| ||||| |||||||    
T  12407738 atgaaaacagatttactttattttatcttttgttatagaaatagcttatacataa-cacttgtatgata 12407805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 29117009 - 29117049
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaata 139  Q
    |||||||||||||||||||||| | |||| |||||||||||    
T  29117009 gaaaacagtttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 4191742 - 4191664
Alignment:
Q  88 ggatatcttatgaaaacagtttgactttattttt-tattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||| || ||||||||||||||||||    
T  4191742 ggataacttatgaaaacagtttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgata 4191664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 47970310 - 47970245
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||| |||||||||| ||||| | |||| ||||||||||||||| || ||||||||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 54325113 - 54325182
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||||||||||| | |||| | |||||||||| || || | ||||||||||||||||    
T  54325113 tatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgata 54325182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 51044513 - 51044597
Alignment:
Q  75 cataagctcttttggatatcttatgaaaaca-gtttgactttattttttattttcttatagaaatagcttctatataagcactta 158  Q
    |||||| ||| | ||||| |||||||||||| ||||||||||||||| | |||| ||||||||||||||| || |||| ||||||    
T  51044513 cataagttctctaggatagcttatgaaaacaagtttgactttattttatcttttgttatagaaatagcttatacataaacactta 51044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 7022664 - 7022595
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||||||| | ||||||| |||||| | |||||||||| ||||||||| ||  |||||||||||||||    
T  7022664 cttatgaaaataatttgactctattttatcttttcttataaaaatagcttataattaagcacttatatga 7022595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 20907164 - 20907103
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttata 160  Q
    ||||||||||| |||||||||| | |||||||||| ||||||||| || |||| ||||||||    
T  20907164 gaaaacagtttcactttattttatcttttcttatacaaatagcttatacataaacacttata 20907103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 21157761 - 21157644
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagtt 196  Q
    |||||||||||||||||||| ||| || ||| ||||  ||||||||  || ||||||||||||||||||  |||||  |||| |||  |||||  |||||    
T  21157761 atgaaaacagtttgactttagtttatactttgttatcaaaatagctgatacataagcacttatatgataaacacttctgatacaagtgcttaattaagtt 21157662  T
Q  197 acttatccaaatagaccc 214  Q
    | ||||| |||| |||||    
T  21157661 atttatcaaaatggaccc 21157644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 36734887 - 36734818
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| ||||||||||||||||   |||| ||||||||| || || || ||||||||||||||||||    
T  36734887 tatgaaaatagtttgactttattttaccttttgttatagaaagagattatacataagcacttatatgata 36734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 44319943 - 44319875
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||| ||||||||||| | |||| |||||||||||| || || || |||||||||||||||    
T  44319943 tatgaaaacagttcgactttattttatctttt-ttatagaaatagtttatacatgagcacttatatgata 44319875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 7342187 - 7342091
Alignment:
Q  93 tcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaa 189  Q
    |||||||||||||||||||||||||||| | ||||  | ||| ||  |||| || |||||||||||| ||||| ||| |||   |||||||||||||    
T  7342187 tcttatgaaaacagtttgactttattttatcttttactgtagtaagtgcttatacataagcacttatctgataagcatttatactataagcacttaa 7342091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 22684592 - 22684708
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagt 195  Q
    |||||||||| ||||||||||||||    ||| ||||||||||||||| || | ||||| |||||||||| || | || | |||||||| ||||  ||||    
T  22684592 tatgaaaacaatttgactttattttaccgtttgttatagaaatagcttatacagaagcatttatatgataagcgcatatggtataagcaattaattaagt 22684691  T
Q  196 tacttatccaaatagac 212  Q
    |  |||||||| |||||    
T  22684692 tgtttatccaactagac 22684708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 24160572 - 24160640
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||| ||||||| ||||| || | |||| ||||||||| ||||| | |||||||||||||||||||    
T  24160572 atgaaaatagtttgaatttatattatcttttgttatagaaaaagcttatttataagcacttatatgata 24160640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 24444032 - 24443932
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagt 195  Q
    ||||||||  |||||| |||||||| |||||| || ||||||| |||| || ||||| |||||||||||| |  |||| | ||||||| ||||| |||||    
T  24444032 tatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataagcgcttaataaagt 24443933  T
Q  196 t 196  Q
    |    
T  24443932 t 24443932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 35411087 - 35411151
Alignment:
Q  95 ttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttat 159  Q
    ||||||||||| |||||||| ||||| || ||| ||||| |||||||||  ||||||||||||||    
T  35411087 ttatgaaaacaatttgacttaattttatagtttgttataaaaatagctttaatataagcacttat 35411151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 49219133 - 49219022
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagt 195  Q
    |||||||| | |||||||||||||| |||||| ||||||||||| ||| ||  ||| |||| |||||||| || |  | | |||||||||||||  |||     
T  49219133 tatgaaaataatttgactttattttatattttgttatagaaataacttatacctaaccactcatatgataagcgccaatgctataagcacttaactaagc 49219034  T
Q  196 tacttatccaaa 207  Q
    ||| ||||||||    
T  49219033 tacatatccaaa 49219022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 2980542 - 2980616
Alignment:
Q  96 tatgaaaacagtttgactttattttttat-----tttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| |||||||||||||||| | |     ||| ||||||||||||||| || ||||||||||||||||||    
T  2980542 tatgaaaatagtttgactttattttgtttcattttttgttatagaaatagcttatacataagcacttatatgata 2980616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 4071876 - 4071811
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatg 162  Q
    |||||||| | |||||||||||||| | |||| |||||||||||| || ||||||| ||||||||||    
T  4071876 tatgaaaataatttgactttattttatcttttgttatagaaatag-ttatatataaacacttatatg 4071811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 7029416 - 7029370
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagctt 143  Q
    ||||||||| ||||||| |||||| | ||||||||||||||||||||    
T  7029416 atgaaaacaatttgactctattttatcttttcttatagaaatagctt 7029370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 969433 - 969490
Alignment:
Q  108 ttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||   |||| |||||||||| |||| || ||||||||||||||||||    
T  969433 ttgactttattttaccttttattatagaaattgcttatagataagcacttatatgata 969490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 4191611 - 4191546
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatat 161  Q
    ||||||||||  | ||||||||||||  |||| ||||||||||||||| |||| ||| ||||||||    
T  4191611 tatgaaaacaactcgactttatttttattttttttatagaaatagcttatatacaagaacttatat 4191546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 5219576 - 5219645
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| ||||| |||||||||| | |||| ||||||| ||||| | || || |||||||||||||||    
T  5219576 tatgaaaatagtttaactttattttatcttttattatagagatagcatatacatgagcacttatatgata 5219645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 7731766 - 7731717
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagctt 143  Q
    |||||||||||||||| |||||||||  | |||| |||||||||||||||    
T  7731766 cttatgaaaacagtttaactttatttagtcttttattatagaaatagctt 7731717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 19422412 - 19422343
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||  ||||||||||||| | | |||| ||||||||||| ||| || ||||||| ||||||||||    
T  19422412 tatgaaaaatgtttgactttattatatcttttgttatagaaataacttatacataagcatttatatgata 19422343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 24929488 - 24929443
Alignment:
Q  95 ttatgaaaacagtttgactttattttttattttcttatagaaatag 140  Q
    |||||||||||||| ||||||||||| | |||| ||||||||||||    
T  24929488 ttatgaaaacagttagactttattttatcttttgttatagaaatag 24929443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 30024694 - 30024625
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| ||| |||||||||| | |||| ||||||||||| ||| |  ||||| ||||||||||||    
T  30024694 tatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgata 30024625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 30207647 - 30207715
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||| |||||||| | |||| |||||||| || | | || ||||||||||||||||||    
T  30207647 tatgaaaacagtttga-tttattttattttttgttatagaactaacatatacataagcacttatatgata 30207715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 46019706 - 46019767
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatat 161  Q
    ||||||||||| ||||||||||| |||| || ||||||||||||  | |||| |||||||||    
T  46019706 aaaacagtttggctttattttttcttttgttctagaaatagcttacacataaacacttatat 46019767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 51555924 - 51556012
Alignment:
Q  76 ataagctcttttggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||| ||||   |||||||| || | |||||||||||| | |||| |||||  |||||||| || ||||||||||||||||||    
T  51555924 ataagctctttaggatggtttatgaaa-caatctgactttattttatcttttgttataataatagcttatacataagcacttatatgata 51556012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 55994283 - 55994328
Alignment:
Q  116 attttttattttcttatagaaatagcttctatataagcacttatat 161  Q
    ||||| |||||||||||||||||||||| || ||||||| ||||||    
T  55994283 attttatattttcttatagaaatagcttatacataagcatttatat 55994328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 8422926 - 8422982
Alignment:
Q  109 tgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||| | |||| ||||| ||||||||| || |||||||| |||||||||    
T  8422926 tgactttattttatctttttttataaaaatagcttatacataagcacatatatgata 8422982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 9843775 - 9843819
Alignment:
Q  129 ttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    ||||||||||||||| || ||||||| |||||||||| |||||||    
T  9843775 ttatagaaatagcttatacataagcagttatatgataagcactta 9843819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 41028929 - 41029013
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataag 182  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||| || |||||||||||||||||| ||| ||| | ||||||    
T  41028929 tgaaaacagattgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataagcatttaagctataag 41029013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 38462275 - 38462206
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||||||||||| | ||||  |||||||||||||| || |||| |||||||||||||    
T  38462275 tatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgata 38462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 44284126 - 44284203
Alignment:
Q  88 ggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| |||||||||||||||||||||| |||| | |||| ||||||||||||||| || || || ||||||||||||    
T  44284126 ggatagcttatgaaaacagtttgactttgttttattttttgttatagaaatagcttatacattagtacttatatgata 44284203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 51278234 - 51278302
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||| || || |||| ||||||||||    
T  51278234 atgaaaacagtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgata 51278302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 49586992 - 49587057
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatg 162  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||| ||  ||||||||||||||    
T  49586992 tatgaaaacagtttgactttattttatcttttgttatagaaatagcttata-gtaagcacttatatg 49587057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 44374720 - 44374789
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||||||||| | |||| ||| ||| ||||||| || ||||||||||||||||||    
T  44374720 tatgaaaacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgata 44374789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 3758044 - 3757980
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcactta 158  Q
    |||||||||| |||||||||||||||| |||||| ||| | ||||||||| || |||||||||||    
T  3758044 cttatgaaaagagtttgactttattttatattttgttacaaaaatagcttatacataagcactta 3757980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 20192682 - 20192744
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcactta 158  Q
    ||||||||| ||||||||||||||| | |||| ||||| ||||||||| || |||||||||||    
T  20192682 tatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcactta 20192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 40122827 - 40122897
Alignment:
Q  95 ttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||||||||||||| | |||| |||| |||||||||| || ||||| ||| ||| ||||    
T  40122827 ttatgaaaacagtttgactttattttatcttttgttattgaaatagcttatacataagtactgatacgata 40122897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 22232820 - 22232751
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||||||||||| |  ||| ||||| ||||||||| || || |||| ||||||||||    
T  22232820 tatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgata 22232751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 27792866 - 27792797
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| |||||||| ||||||| | |||| || | |||||||||| || ||||||||||||||||||    
T  27792866 tatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgata 27792797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 33307656 - 33307725
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| | |||||||||||||  |||||| |||  |||||||||| || ||||||||||||||||||    
T  33307656 tatgaaaataatttgactttatttcatattttgttactgaaatagcttatacataagcacttatatgata 33307725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 16790181 - 16790233
Alignment:
Q  113 tttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| | |||| ||||||||||| ||| |||||||||||||||||||||    
T  16790181 tttattttatcttttgttatagaaataacttatatataagcacttatatgata 16790233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 16790425 - 16790501
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| |||||||||| | ||||| |||||||| | | || ||||| ||||||||| || ||||||||||||||||||    
T  16790425 gatagcttatgaaaataatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgata 16790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 48528574 - 48528503
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||| |||  |||||||| | | || ||||||||||||||| || ||||| ||||||||||||    
T  48528574 cttatgaaaacagcttggttttattttatttcttgttatagaaatagcttatacataagtacttatatgata 48528503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 48588645 - 48588590
Alignment:
Q  110 gactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||| |||||| ||||||||||| ||| ||| ||||| |||||||||||    
T  48588645 gactttattttatattttattatagaaataacttatatgtaagctcttatatgata 48588590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 905058 - 905116
Alignment:
Q  108 ttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatat 166  Q
    ||||||||||||| | |||| ||||||||||||||| ||  ||||| ||||||||||||    
T  905058 ttgactttattttatcttttgttatagaaatagcttatacttaagcgcttatatgatat 905116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 20502187 - 20502221
Alignment:
Q  131 atagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||| |||||||||||||||||||||    
T  20502187 atagaaatagcttatatataagcacttatatgata 20502221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 1395665 - 1395604
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcactt 157  Q
    |||||||| | |||||||||||||| | |||| ||||||||||||||| || ||| ||||||    
T  1395665 tatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatgcactt 1395604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 3182438 - 3182515
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    |||||||||| |||||||||||||| | ||||  ||||||| || ||| || |||| |||||| |||||| |||||||    
T  3182438 tatgaaaacaatttgactttattttatctttttctatagaagtaacttatacataaacacttaaatgataagcactta 3182515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 32703132 - 32703063
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| ||||| |||||||| | |||| | ||||||||||||| || |||| || ||||||||||    
T  32703132 tatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataaacatttatatgata 32703063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 34318071 - 34318035
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagctt 143  Q
    |||||||||||||| |||||| |||||||||||||||    
T  34318071 tttgactttattttatattttgttatagaaatagctt 34318035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 35534941 - 35535006
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||||||    
T  35534941 aaaacagtttgactttattttaacttttattatagaaatagcttatatataagcacttatatgata 35535006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 40280259 - 40280350
Alignment:
Q  74 ccataagctcttttggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||| | |||| |||||||||||| ||| |||||||||| | |||| || |||||||| ||| |||||| ||||||||||||||    
T  40280259 ccataagctcttctagatagcttatgaaaacaattttactttattttatcttttgttgtagaaataacttatatataggcacttatatgata 40280350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 3645892 - 3645961
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| ||||||| ||| |||| |||||||||||||||||||||| || | ||||||||||||||||    
T  3645892 tatgaaaatagtttgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgata 3645961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 14482192 - 14482103
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaa 189  Q
    |||||| |||||||||||||| | |||| |||||||||||| || || |||||||||||||||||| ||||| | | |||||| ||||||    
T  14482192 aaaacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcactaatgctataagaacttaa 14482103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 6918258 - 6918341
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataag 182  Q
    |||||||||||||||||||||| | |||| ||||| ||||||||| |||| || ||||||||| ||| ||||||| | ||||||    
T  6918258 gaaaacagtttgactttattttatcttttattatataaatagcttatatacaaacacttatattataagcacttaagttataag 6918341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 34563265 - 34563175
Alignment:
Q  75 cataagctcttttggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||| ||||||||| |  |||||||||  ||||||||||||||| |  ||| | ||||||||| ||| |||||||||||||||||||||    
T  34563265 cataagttcttttggacagtttatgaaaattgtttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgata 34563175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 8536125 - 8536191
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||||||| |||||||| | |||| ||||| ||||||||||||||| || ||||||||||||||||    
T  8536125 tatgaaaacaatttgacttcactttt-attttgttatagaaatagcttatacataagcacttatatga 8536191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 8629080 - 8629034
Alignment:
Q  119 ttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||||    
T  8629080 ttttattttgttatagaaatagcttataaataagcacttatatgata 8629034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 14929190 - 14929256
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttata 160  Q
    |||||||||||||||||||| |||||| | |||| ||||||||||||||| |   ||||||||||||    
T  14929190 cttatgaaaacagtttgactctattttgtcttttattatagaaatagcttatgcgtaagcacttata 14929256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 29699247 - 29699133
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagtt 196  Q
    |||| |||| |||||||||||||| | |||| ||||||||||| ||| || ||||||| ||||||||||   | ||| | |||||||||||||  ||||     
T  29699247 atgacaacattttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataagcacttaactaagtc 29699148  T
Q  197 acttatccaaataga 211  Q
      |||||||||||||    
T  29699147 gtttatccaaataga 29699133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 39392744 - 39392814
Alignment:
Q  103 acagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    |||||||||||||||||| | |||| |||||||||||| || || |||  ||||||||||||| |||||||    
T  39392744 acagtttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcactta 39392814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 11119082 - 11119186
Alignment:
Q  103 acagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagttacttat 202  Q
    |||||||||||||||||| | |||| ||||||||||| | | || ||||||  |||||||||||| | ||| | ||||| |||||||  |||||  ||||    
T  11119082 acagtttgactttattttatcttttgttatagaaatatcgtatacataagcgattatatgatatgtagttatgctataaacacttaatcaagttgtttat 11119181  T
Q  203 ccaaa 207  Q
    |||||    
T  11119182 ccaaa 11119186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 35869831 - 35869731
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagt 195  Q
    ||||||||  |||||| |||||||| |||||| || ||||||| |||| || ||||| |||||||||||| |  |||| | ||||||| ||||| |||||    
T  35869831 tatgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataagcgcttaataaagt 35869732  T
Q  196 t 196  Q
    |    
T  35869731 t 35869731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 40356854 - 40356798
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||||||||||| | |||| ||||| ||||||||| || ||||||||||||||||    
T  40356854 tttgactttattttatcttttattatataaatagcttatagataagcacttatatga 40356798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 8194007 - 8194082
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgat 164  Q
    |||| |||| |||||||| |||||||||||||   ||| |||||||||||||||| |  ||||||||||| |||||    
T  8194007 gatagcttaagaaaacagattgactttattttaactttacttatagaaatagcttatccataagcacttaaatgat 8194082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 35298556 - 35298623
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||| ||||| ||||||||| | |||| |||  |||||||||| || ||||||||||||||||||    
T  35298556 tgaaaactgtttggctttattttatcttttgttactgaaatagcttatacataagcacttatatgata 35298623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 42597394 - 42597331
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttata 160  Q
    ||||||||| ||| |||||||||| | |||| ||||||||||||||| || ||||| |||||||    
T  42597394 atgaaaacaattttactttattttatcttttgttatagaaatagcttatacataagtacttata 42597331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 20672787 - 20672697
Alignment:
Q  75 cataagctcttttggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||   ||||| ||||| ||||||||||||||||||||| | |||| ||||| |||  || |  | ||||||||||||||||||    
T  20672787 cataagctctccaggatagcttataaaaacagtttgactttattttatcttttgttatataaagggcatacacataagcacttatatgata 20672697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 27728097 - 27728142
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagc 141  Q
    |||||||| |||||||||||||||| | |||| |||||||||||||    
T  27728097 tatgaaaatagtttgactttattttatctttttttatagaaatagc 27728142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 33209296 - 33209365
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||| ||||||||||| | |||  ||||||||||||||| | ||||  ||||| |||||||    
T  33209296 tatgaaaacagttcgactttattttatctttcattatagaaatagcttatttatagacacttgtatgata 33209365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 40728498 - 40728563
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||||||| | |||| ||||||||||| ||| |  || | |||||||||||||    
T  40728498 aaaacagtttgactttattttatcttttgttatagaaataacttatgcatgaacacttatatgata 40728563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 8823482 - 8823538
Alignment:
Q  109 tgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||| |||| | |||| |||||||||| |||| |||||||||||||| ||||||    
T  8823482 tgactttgttttatcttttgttatagaaatggcttatatataagcacttaaatgata 8823538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 10079142 - 10079230
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcactt 187  Q
    |||||||||||||||| ||||| | |||| | ||||||||||| | || |||||||  ||||||| | ||| |||  ||||||||||||    
T  10079142 gaaaacagtttgacttcattttatcttttatcatagaaatagcctataaataagcatgtatatgaaaagcatttataatataagcactt 10079230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 26215487 - 26215427
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttat 159  Q
    ||||| ||||| |||||||||| | |||| ||||||||||||||| || |||||| |||||    
T  26215487 gaaaatagtttaactttattttatcttttgttatagaaatagcttatacataagcgcttat 26215427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 29973073 - 29973013
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcactta 158  Q
    |||||| ||||||||||||||||   || | ||| ||||||||||| ||||||||||||||    
T  29973073 tgaaaatagtttgactttattttaccttgtgttaaagaaatagcttatatataagcactta 29973013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 34770885 - 34770817
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||| |||||||||||||| | |||| | || ||||||| || || ||||||||||| ||||||    
T  34770885 atgaaaacaatttgactttattttatcttttgtaatggaaatagtttttacataagcacttacatgata 34770817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 43907873 - 43907961
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataag 182  Q
    |||||||||||| |||||||||||||| | ||||    |||||||| ||| ||| ||| |||||||||||||  || ||| ||||||||    
T  43907873 cttatgaaaacaatttgactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataag 43907961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 24774748 - 24774683
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||||||| |||||| |||||||||||| || |||||||||||||| ||||||    
T  24774748 aaaacagtttgactttattttatattttgttatagaaatagtttatatataagcacttacatgata 24774683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 10452436 - 10452522
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataag 182  Q
    |||||||| ||||||| |||||||| |||||| ||||||||||||||| || ||||||||| ||||||||  |||||| | ||||||    
T  10452436 tatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatatgatagccacttatgctataag 10452522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 8470063 - 8470141
Alignment:
Q  95 ttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    |||||||||| ||||||||||||||| |  ||| ||| ||||||||||| | |||||||||||||| |||| |||||||    
T  8470063 ttatgaaaacggtttgactttattttctcatttgttacagaaatagcttatttataagcacttatacgataagcactta 8470141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 10154215 - 10154145
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatat 166  Q
    ||||||||||||||||||||||||| | ||||  |||||||| ||||| || | |||||||||||||||||    
T  10154215 tatgaaaacagtttgactttattttatctttttctatagaaacagcttgtacagaagcacttatatgatat 10154145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 2514687 - 2514610
Alignment:
Q  105 agtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataag 182  Q
    |||||||||||||||| | |||| ||||||||||||||| || ||||||||||| |||||| ||| ||| | ||||||    
T  2514687 agtttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgctataag 2514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 13360729 - 13360660
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||| | ||||||||||||| |||||| |||||||||||| ||  | ||||||||||||||||||    
T  13360729 tatgaaaactgcttgactttattttatattttgttatagaaatagtttgcacataagcacttatatgata 13360660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 4248941 - 4248885
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||||||||||| | |||| |||| |||||||||| |||||||||||||||||||    
T  4248941 tttgactttattttatcttttgttattgaaatagcttatatataagcacttatatga 4248885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 32975967 - 32975905
Alignment:
Q  101 aaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||||||||||||||||| |||||| ||| ||||||| ||| || |||| |||||||||||    
T  32975967 aaacagtttgactttattttatattttgttacagaaataacttatacataaacacttatatga 32975905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 3217266 - 3217335
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| | |||||||||||||| | || ||||| | ||||||||| || ||||||||||||||||||    
T  3217266 tatgaaaataatttgactttattttatcttctcttacaaaaatagcttatacataagcacttatatgata 3217335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 7351684 - 7351753
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||| |||||||||| || ||| ||||| |||||| || || ||||||| ||||||||||    
T  7351684 tatgaaaacagtttaactttattttatagtttattatataaatagtttatacataagcatttatatgata 7351753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 9027567 - 9027506
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatat 161  Q
    ||||||||||||||||||||| | || | || |||||||||||| || ||||||||||||||    
T  9027567 aaaacagtttgactttattttatcttctattgtagaaatagcttatagataagcacttatat 9027506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 29274305 - 29274374
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||||||||| | ||||  |||||||||||||| || ||||||| || |||||||    
T  29274305 tatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgata 29274374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 32386179 - 32386244
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||||| | |||||| |  |||||||||| || ||||||||||||||||||    
T  32386179 aaaacagttttactttattttatcttttctaagtgaaatagcttatacataagcacttatatgata 32386244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 31672537 - 31672613
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| ||||||||||||||||||||||||||| | |||| | || ||||||| || || |||| ||||| |||||||    
T  31672537 gatagcttatgaaaacagtttgactttattttattttttgtcatggaaatagtttatacataaacacttgtatgata 31672613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 3204618 - 3204705
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagc 183  Q
    ||||||||||||| ||||||||||| | |||| |||||||| ||| || |   ||||||||||||||||||  ||||||  |||||||    
T  3204618 tatgaaaacagttcgactttattttatcttttattatagaagtagtttattcgtaagcacttatatgatataaacttacactataagc 3204705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 33068639 - 33068730
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaa 189  Q
    ||||||||||||||  ||||||| | |||| ||||||||||| ||| || ||||||| |||| ||||| || |||| | ||||| |||||||    
T  33068639 tgaaaacagtttgatattattttatcttttgttatagaaataacttatacataagcatttatttgataagcgcttatgctataaacacttaa 33068730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 4247710 - 4247779
Alignment:
Q  95 ttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||| |||||||||| ||| |||| | |||| ||||||||||||||| || ||||||||||| ||||||    
T  4247710 ttatgacaacagtttgaattt-ttttatcttttgttatagaaatagcttatacataagcacttacatgata 4247779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 8420280 - 8420342
Alignment:
Q  103 acagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||||| |  ||| ||| ||||||| ||| || ||||||||||||||||||    
T  8420280 acagtttgactttattttatcatttattaaagaaataacttgtacataagcacttatatgata 8420342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 9833176 - 9833242
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||||||||| | | || | ||||||||| ||| || | ||||||||||||||||    
T  9833176 gaaaacagtttgactttattttatttattgtaatagaaatatcttatagagaagcacttatatgata 9833242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 2205637 - 2205698
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatata 150  Q
    |||| |||||||||||| ||||||||| |||| | |||| || |||||||||||| ||||||    
T  2205637 gatagcttatgaaaacaatttgactttgttttatcttttgttttagaaatagcttatatata 2205698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 22742360 - 22742291
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||||||||| |  ||| ||||| ||||||||| || ||||| ||||||| ||||    
T  22742360 tatgaaaacaatttgactttattttatcctttgttatacaaatagcttatagataagaacttatacgata 22742291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 31583717 - 31583648
Alignment:
Q  74 ccataagctcttttggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagctt 143  Q
    ||||||||| ||  ||||| |||||||||||| |||||||| ||||| | | || |||||||||||||||    
T  31583717 ccataagcttttcgggatagcttatgaaaacaatttgacttcattttatctcttgttatagaaatagctt 31583648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 31668789 - 31668830
Alignment:
Q  124 ttttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| ||||||||||||||| || ||||||||||||||||||    
T  31668789 ttttgttatagaaatagcttatacataagcacttatatgata 31668830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 32386639 - 32386708
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||| ||||||| | ||||||||  |||||||  | || ||||||||||||||||||    
T  32386639 tatgaaaacaatttgaccttattttatcttttcttagtgaaatagtctatacataagcacttatatgata 32386708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 34405095 - 34405034
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatat 161  Q
    |||||| ||||||||||||||   |||| ||||||||||||||| || |||| |||||||||    
T  34405095 aaaacaatttgactttattttaacttttattatagaaatagcttatagataaacacttatat 34405034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 1810393 - 1810445
Alignment:
Q  113 tttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| | |||| ||||||||||||||| |  ||||||||||||||||||    
T  1810393 tttattttatcttttgttatagaaatagcttttgcataagcacttatatgata 1810445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 29249442 - 29249390
Alignment:
Q  122 tattttcttatagaaatagcttctatataagcacttatatgatatgcacttac 174  Q
    |||||| ||||||||||||||  || |||||||||||||||||| ||| ||||    
T  29249442 tattttgttatagaaatagctgatacataagcacttatatgataagcatttac 29249390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 17952777 - 17952846
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| |||||||||||||||| | |||| ||||||||||||||| ||||||||| |||||||||||    
T  17952777 tatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgata 17952846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 28803582 - 28803651
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||| ||||||||||||||||| | |||| |||| |||||| ||| |||||||||||||||||||||    
T  28803582 tatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgata 28803651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 7283014 - 7282950
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcactta 158  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||||||| || |||| ||||||    
T  7283014 cttatgaaaacagtttgacttcattttttcttttcttataaaaatagcttatacataaacactta 7282950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 32098382 - 32098442
Alignment:
Q  94 cttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagca 154  Q
    |||||||||||| |||||||||||||| | |||| ||||||||||||||| ||||||||||    
T  32098382 cttatgaaaacactttgactttattttatcttttgttatagaaatagcttatatataagca 32098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 31461421 - 31461362
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatat 166  Q
    |||||||||||||| | |||| ||||||||||||||| ||||||| ||||||||||||||    
T  31461421 tttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatat 31461362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 33192187 - 33192126
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcactt 157  Q
    ||||||||||||||||||||||||| | || | |||||||||||| || |||||||||||||    
T  33192187 tatgaaaacagtttgactttattttatcttatgttatagaaatagtttttatataagcactt 33192126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 37053588 - 37053519
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||||||||||| | || | ||||||||||||  | || ||||||||||||||||||    
T  37053588 tatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgata 37053519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 3673801 - 3673734
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||||||| ||| |||||||||| |||||| ||||||||||| ||  || ||||||||||||||||    
T  3673801 tatgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttatatga 3673734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 25609778 - 25609727
Alignment:
Q  108 ttgactttattttttattttcttatagaaatagcttctatataagcacttat 159  Q
    ||||||||||||| | |||||||||||||||||||| || ||||||||||||    
T  25609778 ttgactttattttatcttttcttatagaaatagcttatacataagcacttat 25609727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 35755579 - 35755642
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttata 160  Q
    ||||||||| |||||||||||||| |||||  ||||||||||||||| || |||| ||||||||    
T  35755579 atgaaaacaatttgactttattttctatttgattatagaaatagcttatacataaacacttata 35755642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 18884876 - 18884806
Alignment:
Q  96 tatgaaaacagtttgactttatttttta-ttttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||| |||||||| || |||| ||||||||||| ||| || || |||||||||||||||    
T  18884876 tatgaaaacagtttgattttattttatattttttttatagaaataacttatacatgagcacttatatgata 18884806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 33944599 - 33944529
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatat 166  Q
    |||||||||| |||||||||||||| |||||| ||  ||||||||||| | ||||| || |||||||||||    
T  33944599 tatgaaaacaatttgactttattttatattttattcaagaaatagcttatttataaacatttatatgatat 33944529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 3102683 - 3102618
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| |||||||||||||||| ||||||  |||| ||||||||| || ||||||| ||||||||||    
T  3102683 aaaatagtttgactttattttatattttgctataaaaatagcttatacataagcagttatatgata 3102618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 18962114 - 18962183
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||| |||||||||| | |||| ||||| ||||||||  || ||||||||||| ||||||    
T  18962114 tatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcacttacatgata 18962183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 33197327 - 33197384
Alignment:
Q  108 ttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||| | | |||| ||||||||||||||| || ||||||||||||||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgata 33197384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 33267592 - 33267661
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||| ||||||||||    ||| |||||||||||| || || ||||||||||||||||||    
T  33267592 tatgaaaacagtttaactttattttactgtttgttatagaaatagattatacataagcacttatatgata 33267661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 10143162 - 10143103
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttat 159  Q
    ||||||||||||||| ||||| | |||| ||||||||||| ||| || ||||||||||||    
T  10143162 aaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcacttat 10143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 34054977 - 34055040
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttat 159  Q
    |||| |||||||||| ||||||||| | |||| ||||||||||||| | || ||||||||||||    
T  34054977 tatgtaaacagtttgcctttattttatcttttgttatagaaatagcctatacataagcacttat 34055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 37034044 - 37033969
Alignment:
Q  90 atatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||  ||||||||||||||| | |||| |||||||||||| || || ||||| | | ||||||||    
T  37034044 atatcttatgaaaatcgtttgactttattttatctttttttatagaaatagtttatacataagtattcatatgata 37033969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 9878762 - 9878816
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagca 154  Q
    |||| ||||||| |||||||| | |||| ||||||||||||||| ||||||||||    
T  9878762 aaaatagtttgagtttattttatcttttgttatagaaatagcttttatataagca 9878816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 11344360 - 11344425
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatat 161  Q
    |||||||||| ||||||||| |||| | |||| ||||||||||| ||| |  ||||||||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcacttatat 11344425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 14209271 - 14209202
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||||| |||||||| | |||| |||| ||||||||||  | | || |||||||||||||    
T  14209271 tatgaaaacagtttgaatttattttatcttttgttattgaaatagcttagacagaaacacttatatgata 14209202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 3235464 - 3235523
Alignment:
Q  101 aaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatat 161  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||  || ||||||||||||||    
T  3235464 aaacagtttgactttatttttca-tttgttataaaaatagctaatacataagcacttatat 3235523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 5511559 - 5511499
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcact 156  Q
    |||||||| |||||||||||||||| |||||  ||||||||||| ||| || | |||||||    
T  5511559 tatgaaaaaagtttgactttattttatatttcattatagaaataacttatacagaagcact 5511499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 9551569 - 9551517
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataag 152  Q
    ||||||||||||||||||||| || ||| ||||| ||||||||| || |||||    
T  9551569 aaaacagtttgactttattttataatttattataaaaatagcttatacataag 9551517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 9886283 - 9886215
Alignment:
Q  114 ttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataag 182  Q
    ||||||||| |||| ||||||||||||||| || ||||||||  |||||||| ||| ||| | ||||||    
T  9886283 ttattttttttttttttatagaaatagcttatacataagcacacatatgataagcaattaggctataag 9886215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 27288622 - 27288558
Alignment:
Q  101 aaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||| |||||||| | |||| ||||||||| | ||| || ||||||||||||| ||||    
T  27288622 aaacagtttgattttattttatcttttattatagaaacaacttttacataagcacttataggata 27288558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 33526043 - 33526093
Alignment:
Q  96 tatgaaaacagtttgactttattttt---tattttcttatagaaatagctt 143  Q
    |||||||| |||||||||||||||||   |||||| |||||||||||||||    
T  33526043 tatgaaaatagtttgactttatttttatatattttgttatagaaatagctt 33526093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 37845442 - 37845514
Alignment:
Q  110 gactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcacttacgatataag 182  Q
    ||||||||||| |||||| ||||| ||||||| | || ||||| ||||||||||||  || ||||| ||||||    
T  37845442 gactttattttatattttattataaaaatagcatataaataagaacttatatgataaacatttacgctataag 37845514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 45107616 - 45107548
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||    
T  45107616 tatgaaaatagtttgactttattttat-ttttcttatagaaatagcttatagataagcacttatatgata 45107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 46499934 - 46499996
Alignment:
Q  100 aaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatg 162  Q
    |||||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||||    
T  46499934 aaaacaatttgactttattttatcttttcttatagaaatagcttatagataagcacttatatg 46499996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 23373347 - 23373443
Alignment:
Q  77 taagctcttttggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    |||||||||  ||||| ||||||||||||| ||||||||||||| | ||||  |||||||||||||  ||  |||||| |||||||||| |||||||    
T  23373347 taagctcttcaggatagcttatgaaaacagattgactttattttatcttttgatatagaaatagctaatacgtaagcagttatatgataagcactta 23373443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 50319308 - 50319230
Alignment:
Q  74 ccataagctcttttggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataag 152  Q
    ||||||||||| | ||||| ||||||||||||  ||||||||||||| | |||| ||||||||||||||| || |||||    
T  50319308 ccataagctctctaggatagcttatgaaaacaacttgactttattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 30259571 - 30259632
Alignment:
Q  104 cagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||| |||||| ||||||||||||||| |  |||||||||| |||||||    
T  30259571 cagtttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgata 30259632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 48282125 - 48282058
Alignment:
Q  99 gaaaacagtttgactttattttttattt-tcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| |||||||||||||||| | ||| | ||||||||||||||| || ||||||||||||||||||    
T  48282125 gaaaatagtttgactttattttatctttcttttatagaaatagcttttacataagcacttatatgata 48282058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 45804271 - 45804209
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcactta 158  Q
    |||||||| |||||||||||||||| |  ||| ||||||||||| ||| ||||||||||||||    
T  45804271 tatgaaaatagtttgactttattttattatttattatagaaataacttttatataagcactta 45804209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 23895330 - 23895261
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| |||||||||| |||||||| | |||| ||||||||||||||| || ||||  ||||||||||||    
T  23895330 tatgagaacagtttgaatttattttatcttttgttatagaaatagcttatacataataacttatatgata 23895261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 38651477 - 38651554
Alignment:
Q  88 ggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| |||||||||||| || ||||||| ||| | |||| |||||||| |||||| || ||||||||||| ||||||    
T  38651477 ggatagcttatgaaaacaattcgactttagtttatcttttgttatagaattagcttatacataagcacttacatgata 38651554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 35080146 - 35080202
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataag 152  Q
    |||| |||||||||||||||||||| | |||| |||||||||| |||| ||||||||    
T  35080146 tatggaaacagtttgactttattttattttttgttatagaaattgcttatatataag 35080202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 15360888 - 15360845
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaata 139  Q
    ||||||||||||||||||||||||| | |||| |||||||||||    
T  15360888 tatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 15437955 - 15437888
Alignment:
Q  98 tgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||||||| ||||| | |||| ||||||||||||||| || |||| ||| || ||||||    
T  15437955 tgaaaacagtttgacttaattttattttttgttatagaaatagcttttacataaacacatagatgata 15437888  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 17269244 - 17269177
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatga 163  Q
    |||||||||| ||||||||||||||   |||| || |||||||| ||| || ||||||||||||||||    
T  17269244 tatgaaaacaatttgactttattttcacttttgttctagaaataacttatacataagcacttatatga 17269177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 26293174 - 26293229
Alignment:
Q  88 ggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagctt 143  Q
    ||||| |||||||||||| ||||||||||||||   |||| |||||||||||||||    
T  26293174 ggatagcttatgaaaacaatttgactttattttactttttgttatagaaatagctt 26293229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 42550257 - 42550166
Alignment:
Q  74 ccataagctcttttggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||||  ||||  |||||| ||| |||||||||||||||| | |||| |  ||||| |||||| || |||||||||| |||||||    
T  42550257 ccataagctcttcaggatgacttatggaaaaagtttgactttattttatcttttatcgtagaactagcttatacataagcacttgtatgata 42550166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 45999364 - 45999427
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttat 159  Q
    ||||||| |||||||||||||| || | |||| ||||||||||||||| || || |||||||||    
T  45999364 tatgaaagcagtttgactttatcttatcttttgttatagaaatagcttatacatgagcacttat 45999427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 14737774 - 14737824
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaata 139  Q
    |||| |||||||||||| |||||||||||||| | |||| |||||||||||    
T  14737774 gatagcttatgaaaacaatttgactttattttatcttttgttatagaaata 14737824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 17631178 - 17631247
Alignment:
Q  97 atgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    |||||||||||| ||||||||||| | |||| |||||||||||||       ||||||||||||||||| |||||||    
T  17631178 atgaaaacagttagactttattttatcttttgttatagaaatagc-------taagcacttatatgataagcactta 17631247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 36641858 - 36641800
Alignment:
Q  107 tttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||||||| | |||| ||||||||||| ||| |||||||| | ||||||||||    
T  36641858 tttgactttattttatcttttgttatagaaataacttatatataagtaattatatgata 36641800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 1255507 - 1255576
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||| | |||||||| ||||  | ||||  ||||||||||||||||| ||||||| ||||||||||    
T  1255507 tatgaaaagaatttgacttcatttcatcttttactatagaaatagcttctacataagcatttatatgata 1255576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 4200223 - 4200154
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||||||||  ||||||||||||| | |||| ||||| ||||| ||| ||||||| |||||| ||||||    
T  4200223 tatgaaaacaacttgactttattttatcttttgttataaaaataacttatatataaacacttagatgata 4200154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 7274015 - 7274092
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    |||||||||| |||||||||||||  | |||| ||||| ||||| | | || ||||||| |||||||||| |||||||    
T  7274015 tatgaaaacaatttgactttatttcatcttttgttataaaaataacatatacataagcatttatatgataagcactta 7274092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 40357954 - 40358039
Alignment:
Q  88 ggatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgatatgcactta 173  Q
    ||||| || ||||||||| |||||||||||||| |   || ||||||||||||||| || |||  ||||||||| ||| |||||||    
T  40357954 ggatagctcatgaaaacaatttgactttattttatccattgttatagaaatagcttatacatagtcacttatataataagcactta 40358039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 44032075 - 44032144
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| ||||||||||||||   |||| |||||||||  |||| || |||| |||||||||||||    
T  44032075 tatgaaaacaatttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgata 44032144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 4202198 - 4202274
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| ||| ||||||||| ||||||||  ||| | |||| ||||||||||| ||| ||  |||||||||||||||||    
T  4202198 gatagcttttgaaaacagcttgactttggtttatcttttgttatagaaataacttatacttaagcacttatatgata 4202274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 6933037 - 6933105
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgat 164  Q
    |||||||||| |||||||||||||| | |||| ||||| |||| |||| || || ||||||||| ||||    
T  6933037 tatgaaaacaatttgactttattttatgttttgttataaaaatggcttatacatgagcacttatttgat 6933105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 14741523 - 14741459
Alignment:
Q  96 tatgaaaacagtttgactttattttt-tattttcttatagaaatagcttctatataagcacttat 159  Q
    ||||||||||||||| |||| || || |||||| ||| ||||||||||| || ||||||||||||    
T  14741523 tatgaaaacagtttgccttttttattatattttgttacagaaatagcttgtacataagcacttat 14741459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 15687152 - 15687196
Alignment:
Q  99 gaaaacagtttgactttattttttattttcttatagaaatagctt 143  Q
    ||||||| ||| |||||||||| |||||| |||||||||||||||    
T  15687152 gaaaacaatttaactttattttatattttgttatagaaatagctt 15687196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 43333693 - 43333625
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgat 164  Q
    ||||||| ||||| ||||||||||| ||||||||| |||||||| ||| || || | ||| ||||||||    
T  43333693 tatgaaaccagttcgactttattttatattttcttctagaaataacttatacatgaacacatatatgat 43333625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 48748652 - 48748727
Alignment:
Q  89 gatatcttatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| |||||||||||| ||| |||||||||  | |||| | ||||||||||||| || |||||||| |||||||||    
T  48748652 gatagcttatgaaaacaatttaactttatttcatcttttgt-atagaaatagcttatacataagcacatatatgata 48748727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 1150 - 1219
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| || |||||||||||||||| | |||| ||||||||||||||| || ||||||||||||||||||    
T  1150 tatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 2825 - 2756
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    ||||| || |||||||||||||||| | |||| ||||||||||||||| || ||||||||||||||||||    
T  2825 tatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 4966 - 4897
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||| ||||||||||| ||| |||| ||| || ||||||||||||||| |||||| ||||||||||||||    
T  4966 tatggaaacagtttgaatttgttttatatattattatagaaatagcttatatataggcacttatatgata 4897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 6713 - 6782
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||| | ||| | |||| |||||||||||| || || ||||||||||||||||||    
T  6713 tatgaaaacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgata 6782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 27570 - 27501
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||||||||| | || | ||||||||||| ||| || ||||||||||| ||||||    
T  27570 tatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgata 27501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 116632 - 116701
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||| |||||||| | ||| | |||| |||||||||||| || || ||||||||||||||||||    
T  116632 tatgaaaacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgata 116701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 4299 - 4367
Alignment:
Q  96 tatgaaaacagtttgactttattttttat-tttcttatagaaatagcttctatataagcacttatatga 163  Q
    ||||||||| ||||||||||||||| | | ||| |||||||||||| || ||||||||||| |||||||    
T  4299 tatgaaaacggtttgactttattttatctcttttttatagaaatagattatatataagcacatatatga 4367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 34023 - 34103
Alignment:
Q  131 atagaaatagcttctatataagcacttatatgatatgcacttacgatataagcacttaaaaaagttacttatccaaataga 211  Q
    |||||||||||||||| |||| ||||||||||||  |  |||| | ||||||| |||||  |||||  |||||||||||||    
T  34023 atagaaatagcttctacataatcacttatatgatcagatcttatgctataagctcttaattaagttgtttatccaaataga 34103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 9851 - 9920
Alignment:
Q  96 tatgaaaacagtttgactttattttttattttcttatagaaatagcttctatataagcacttatatgata 165  Q
    |||||||||  |||||||| ||||| | |||| ||||||||||| ||| || |||||||| |||||||||    
T  9851 tatgaaaactttttgacttaattttattttttgttatagaaataacttatacataagcacctatatgata 9920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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