View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_13 (Length: 388)
Name: NF20028_low_13
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 42468007 - 42468361
Alignment:
| Q |
11 |
ttattcttatagcgagttttctatcagtaaatgttgaatcttttatccaagagnnnnnnnngaccagaaaacttcgacacatctgagcaagtaatagctc |
110 |
Q |
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| T |
42468007 |
ttattcttatagcgagttttctatcagtaaatgttgaatcttttatccaagagagaaaaaagaccagaaaacttcgacacatctgagcaagtaatagctc |
42468106 |
T |
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| Q |
111 |
aataagtatacactcattattaatggaaaagacatattgactagtaacaatatatttgtagggatgaaatacataacgaagcttatattattttcatcct |
210 |
Q |
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| T |
42468107 |
aataagcatacactcattattaatggaaaagacatattgactagta-caatatatttgtagggatgaaatacataatgaagcttatattattttcatcct |
42468205 |
T |
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| Q |
211 |
gcgtgatgcggatcaatatgtagctagcttacgtaattaacaacagaagccaacaattactagatatgtggaaaacaacaaagagtcacacttttattac |
310 |
Q |
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||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
42468206 |
gcgtgatgcaggtcaatatgtagctagcttacataattaacaacagaagccaacaat-------tatgtggaaaacaacaaggagtcacacttttattac |
42468298 |
T |
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| Q |
311 |
atcaatttttattc-ttaagtatcacagtactggcagcattatgacgattagacagtcatacc |
372 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42468299 |
atcaatttttattctttaagtatcacagtactggcagcattatgacgattacacagtcatacc |
42468361 |
T |
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