View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_14 (Length: 380)
Name: NF20028_low_14
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 366029 - 366376
Alignment:
| Q |
13 |
aaaattataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccagtt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
366029 |
aaaattataactcaagagtatcatgactttatgtgtttcaattttgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccaact |
366128 |
T |
|
| Q |
113 |
gttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
212 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366129 |
gttacatacaattaaatgtcgactttgcaccttttt--catcggtgacttctctagggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
366226 |
T |
|
| Q |
213 |
actcgcatatccaagcccaggcgatccacccatatcaacttagcttctgagtcctacaatgggaaatcaaatgcattaaaagttaacacaacaaaactaa |
312 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366227 |
agtcgcatatccaagcccaggcgatccacccatatcatcttagcttctgagtcctacaatgggaaatcaaatgcattaaaagttaacacaacaaaactaa |
366326 |
T |
|
| Q |
313 |
ctta-----ccccaatattgttttgaagtcacgtttctatttagcagtca |
357 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
366327 |
cttattggtccccaatattgttttgaagtcacgtttctatttagcagtca |
366376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 530193 - 529843
Alignment:
| Q |
13 |
aaaattataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccagtt |
112 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
530193 |
aaaattataactcaacagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccaatt |
530094 |
T |
|
| Q |
113 |
gttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
212 |
Q |
| |
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|| ||||||| |||||||| ||||| ||||| |||| ||||||||| |||||||| ||||| | |||| ||||| |||| ||||||||||||| |
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| T |
530093 |
gtgacatacagttaaatgttgacttggcacc--tttttcatctgtgacttctctagggaaaggaatgcgaacctcaaataaaccgttgttaggagaaaac |
529996 |
T |
|
| Q |
213 |
actcgcatatccaagcccaggcgatccacccatatcaacttagcttctgagtcctacaatgggaaatcaaatgcattaaaagttaacacaacaaaactaa |
312 |
Q |
| |
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| |||||||| ||||||| ||||| |||||||||| ||| ||||||| | |||||||| ||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
529995 |
aaacgcatatctaagcccaaacgatctacccatatcacctttgcttctgtgacctacaat-ggaaatcaaatacattagaagttaacacagcaaaactaa |
529897 |
T |
|
| Q |
313 |
ctta-----ccccaatattgttttgaagtcacgtttctatttagcagtcacata |
361 |
Q |
| |
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|||| | ||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
529896 |
cttatcggtactcaaaattgttttgaagttaggtttctatttagcagtcacata |
529843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 520527 - 520176
Alignment:
| Q |
13 |
aaaattataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccagtt |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |
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| T |
520527 |
aaaattataactcatgagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatactgaggatggaagtttctttctacctcccaagccaatt |
520428 |
T |
|
| Q |
113 |
gttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
520427 |
gttacatacaattaaatgtcgacttcgcaccttttt--catcggtgacttctctaaggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
520330 |
T |
|
| Q |
213 |
actcgcatatccaagcccaggcgatccacccatatcaacttagcttctgagtcctacaatgggaaatcaaatgcattaaaagttaacacaacaaaactaa |
312 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
520329 |
actcgcatatccaagcccaggcgatccacccatatcatcttagcttctgagtcctacaatgggaaaccaaatgcattaaaagttaacacaacaaaactaa |
520230 |
T |
|
| Q |
313 |
ctta-----ccccaatattgttttgaagtcacgtttctatttagcagtcacata |
361 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
520229 |
cttattggtccccaatattgttttgaagtcacgtttctatttagcagtcacata |
520176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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