View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_15 (Length: 371)
Name: NF20028_low_15
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 38410534 - 38410813
Alignment:
| Q |
11 |
caaagggtgcaacaaggtcacttgttaatcatgtaatggagccctcaagtgtggataacattcatccatctgaacctgaaactgcatcagatcattcaca |
110 |
Q |
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| T |
38410534 |
caaagggtgcaacaaggtcacttgttaatcatgtaatggagccctcaagtgtggataacattcatccatttgcagctgaaactgcatcagatcattcaca |
38410633 |
T |
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| Q |
111 |
acaagacatgccaaaaactgcatcagattcagatgcacaacaagagatgataaaaactgcatcagatgcacatcaactcacgcctaagggaaattattgt |
210 |
Q |
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| T |
38410634 |
acaagacatgccaaaaactgcatcagattcaaatgcacaacaagagataataaaaactgcatcagatgcacatcaactcacgcctaagggaaattattgt |
38410733 |
T |
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| Q |
211 |
gctttgtgtaaaaaagtccatgactaaccgttagagacatacatgaacctgtttgtgtatatatactattttatgtttca |
290 |
Q |
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| T |
38410734 |
gctttgtgtaaaaaagtccatgactaaccgttagagacatacatgaacctgtttgtgtatatatgctattttatgtttca |
38410813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 26 - 289
Target Start/End: Complemental strand, 1091152 - 1090886
Alignment:
| Q |
26 |
ggtcacttgttaatcatgtaatggagccctcaagtgtggataacat---tcatccatctgaacctgaaactgcatcagatcattcacaacaagacatgcc |
122 |
Q |
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| T |
1091152 |
ggtcacttgttgatcatgtagtgcagcactcaagtgtggataacatgattcctccacctgcacttgaaactacatcagatcattcacaacgagacacgcc |
1091053 |
T |
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| Q |
123 |
aaaaactgcatcagattcagatgcacaacaagagatgataaaaactgcatcagatgcacatcaactcacgcctaagggaaattattgtgctttgtgtaaa |
222 |
Q |
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| T |
1091052 |
aaaaactgcatcagattcagatgcacaaaaagagatgataataactgcatcagatgcacatcaactcacagctaaaggaaattattgtgccttgtgtaaa |
1090953 |
T |
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| Q |
223 |
aaagtccatgactaaccgttagagacatacatgaacctgtttgtgtatatatactattttatgtttc |
289 |
Q |
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||||||||||| |||| |||||||||||||||||||| ||||| |||||||| ||||||||| |||| |
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| T |
1090952 |
aaagtccatgattaacagttagagacatacatgaaccagtttgcgtatatatgctattttatctttc |
1090886 |
T |
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