View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20028_low_16 (Length: 362)
Name: NF20028_low_16
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_16 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 37246069 - 37245910
Alignment:
| Q |
202 |
gagataccttctttcaatttcatcccaacattnnnnnnncattctcaatgataacaattgactgtgaaatttaaggactcgtgaaatttgcaatccatga |
301 |
Q |
| |
|
||||||| |||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37246069 |
gagatacattctttcaatttcatcccgacat-caaaaaacattctcaatgaaaacaattgactgtgaaatttaaggactcgcgaaatttgcaatccatga |
37245971 |
T |
|
| Q |
302 |
gtgaatcaaaatattgcatcgttcccaagctcgacgatttggaatttggatcaagaagcac |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
37245970 |
gtgaatcaaaatattgcatcgttcccaagcttgacgatttggaatttggatcaagacgcac |
37245910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 37246164 - 37246070
Alignment:
| Q |
14 |
ttatactaggggaatatggaagcttttttatgtctagcaaaattaaatgtatcacacaagattgtgatcgtgagaatgcaaaaaaggaaaatctt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37246164 |
ttatactaggggaatatggaagcttttttatgtctagcaaaatcacatgtatcacacaagattgtgatcgtgagaatgcaaaaaaggaaaatctt |
37246070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 27664555 - 27664523
Alignment:
| Q |
300 |
gagtgaatcaaaatattgcatcgttcccaagct |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27664555 |
gagtgaatcaaaatattgcatcgttcccaagct |
27664523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 4261313 - 4261210
Alignment:
| Q |
241 |
cattctcaatgataacaattgactgtgaaatttaaggactcgtgaaatttgcaatccatgagtgaatcaaaatattgcatcgttcccaagctcgacgatt |
340 |
Q |
| |
|
|||||||||||| ||| ||||| |||| ||||| |||||||| | ||| | |||||| || |||||||| |||| |||||||||||||| |||||| |
|
|
| T |
4261313 |
cattctcaatgaaaacgattgattgtgcaatttgaggactcgccagattaggaatccaagaatgaatcaagttattacatcgttcccaagcctaacgatt |
4261214 |
T |
|
| Q |
341 |
tgga |
344 |
Q |
| |
|
|||| |
|
|
| T |
4261213 |
tgga |
4261210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University