View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_17 (Length: 356)
Name: NF20028_low_17
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 34316660 - 34316333
Alignment:
| Q |
11 |
cacagaccaaactactctagctttctttatgaaagtttgatctaagaatacttggtcatcatgtttactatcaaaatctttccttttcttcattaagttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316660 |
cacagaccaaactactctagctttctttatgaaagtttgatctaagaatacttggtcatcatgtttactatcaaaatctttccttttcttcattaagttc |
34316561 |
T |
|
| Q |
111 |
atttcttttcctacagcaaacaggttaccatcatcagtgtgatctgatccattcctcattaagtgaattccctcaagactttcaaattctcttgcctcac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316560 |
atttcttttcctacagcaaacaggttaccatcatcagtgtgatctgatccattcctcattaagtgaattccctcaagactttcaaattctcttgcctcac |
34316461 |
T |
|
| Q |
211 |
gtattctttttcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgctccatgttgaacacctttcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34316460 |
gtattctttttcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgctccatgttgaacacctttcat |
34316361 |
T |
|
| Q |
311 |
caccctgcttgtttctccatcaacagac |
338 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
34316360 |
caccctgcttgtttctccatcaacagac |
34316333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 34322010 - 34321968
Alignment:
| Q |
11 |
cacagaccaaactactctagctttctttatgaaagtttgatct |
53 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
34322010 |
cacataccaaactactctagctttctttatggaagtttgatct |
34321968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 190 - 331
Target Start/End: Original strand, 38953054 - 38953195
Alignment:
| Q |
190 |
tttcaaattctcttgcctcacgtattctttttcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgc |
289 |
Q |
| |
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||||||||||||| |||| |||| |||||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||| | |||||||||||| |
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| T |
38953054 |
tttcaaattctctaacctcgtgtatcctttttctgaagacatgttgccatatatttcgcaactctttcatccttatgggcttaaggagataatcacatgc |
38953153 |
T |
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| Q |
290 |
tccatgttgaacacctttcatcaccctgcttgtttctccatc |
331 |
Q |
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|| ||||| || ||||||||||||||||||||||||||||| |
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| T |
38953154 |
accgtgttggacgcctttcatcaccctgcttgtttctccatc |
38953195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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