View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20028_low_18 (Length: 355)

Name: NF20028_low_18
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20028_low_18
NF20028_low_18
[»] chr1 (1 HSPs)
chr1 (9-355)||(32216632-32216969)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 32216632 - 32216969
Alignment:
Q  9 ttacaacaatcgattatacttcttaattgcacttcaccacatattttcttacactttctttaatttggccagaataattgacttataactttcggaaggg 108  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32216632 ttacaacaatcgattatacttcttaattgcacttcac---atattttcttacactttctttaatttggccagaataattgacttataactttcggaaggg 32216728  T
Q  109 ctcacttagatgaaacaataggaatgtgaataatacaataaatccaatattattttacccaagtgaaaacgaaacacattttatttgtcaccttagccaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32216729 ctcacttagatgaaacaataggaatgtgaataatacaataaatccaatattattttacccaagtgaaaacgaaacacattttatttgtcaccttagccaa 32216828  T
Q  209 cgcaaatgattccatcaccgcaaccaacaagcatggctatggctatggtgatgattagttgacaaaaaacaacttgaatccatttcaattccctactgga 308  Q
    | ||||||||||||||||||||||||||||||      ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  32216829 cacaaatgattccatcaccgcaaccaacaagc------atggctatggtgatgtttagttgacaaaaaacaaattgaatccatttcaattccctactgga 32216922  T
Q  309 atgaacttcaacataaaaagaacatattcatacaaccaaacaatatt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32216923 atgaacttcaacataaaaagaacatattcatacaaccaaacaatatt 32216969  T

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