View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_19 (Length: 354)
Name: NF20028_low_19
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 338
Target Start/End: Original strand, 41312636 - 41312965
Alignment:
| Q |
4 |
ggggtgttaacatgaatcaagaagaattatacataaatagtggactaaaatgcacactcctgttactagtagtagtgacatgaagtcattgtctcagaaa |
103 |
Q |
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| T |
41312636 |
ggggggttaacatgaatcaagaagaattatacataaatagtggactaaaatgcacactcctgttactagtagtagtgacatgaagtcattgtctcagaaa |
41312735 |
T |
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| Q |
104 |
aatagtgatcagaagtcatgaaccatgcgtaaacagtgagcttattagtttaagggttttgaattatggagcaaaaaatccaattaattaacacgaaaag |
203 |
Q |
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| T |
41312736 |
aatagtgatcagaagtcatgaaccatgcgtaaacagtgagcttattagtttaagggttttgaattatggagcaaaaaatcc----aattaacacgaaaag |
41312831 |
T |
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| Q |
204 |
ttcaatattttttacagctttaatatattttacgatgatagtagtttttacagctgtttcttacaaagttccctttcgcaaatgggaaaaccaagctctt |
303 |
Q |
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| T |
41312832 |
ttcaatattttttacagctttaatatattttacgatgatagtagtttttacagctgtttcttacaaagttccctttcgcaaatgggaaaaccaagctctt |
41312931 |
T |
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| Q |
304 |
nnnnnnnntgtgaaaacaaagatgaaaatgacatg |
338 |
Q |
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| T |
41312932 |
-aaaaaaatgtgaaaacaaagatgaaaatgacatg |
41312965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 16308008 - 16308299
Alignment:
| Q |
30 |
ttatacataaatagtggactaaaatgcacactcctgttactagtagtagtgacatgaagtcattgtctcagaaaaatagtgatcagaagtcatgaaccat |
129 |
Q |
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| T |
16308008 |
ttatacataaatagtggactaaaatgcacactcctgttactagtagtagtgacatg---------tctcagaaaaatagtgatcagaagtca----ccat |
16308094 |
T |
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| Q |
130 |
gcgtaaacagtgagcttattagtttaagggttttgaattatggagcaaaaaatccaattaattaacacgaaaagttcaatattttttacagctttaatat |
229 |
Q |
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| T |
16308095 |
gcgtaaacagtgagcttattagtttaagggttttgaattatggagcaaaaaatccaatt----aacacgaaaagttcaatattttttacagctttaatat |
16308190 |
T |
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| Q |
230 |
attttacgatgatagtagtttttacagctgtttcttacaaagttccctttcgcaaatgggaaaaccaagctcttnnnnnnnntgtgaaaacaaagatgaa |
329 |
Q |
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| T |
16308191 |
attttacgatgatagtagtttttacagctgtttcttacaaagtttcctttcgcaaatgggaaaaccaagctcttaaaaaaaatgtgaaaacaaagatgaa |
16308290 |
T |
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