View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20028_low_2 (Length: 633)

Name: NF20028_low_2
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20028_low_2
NF20028_low_2
[»] chr2 (4 HSPs)
chr2 (328-615)||(42795512-42795799)
chr2 (11-279)||(42795848-42796118)
chr2 (101-201)||(19906299-19906400)
chr2 (559-609)||(42795444-42795495)
[»] chr6 (2 HSPs)
chr6 (107-201)||(8645159-8645254)
chr6 (223-274)||(8645091-8645142)
[»] chr5 (6 HSPs)
chr5 (107-201)||(4425386-4425480)
chr5 (107-195)||(39263655-39263743)
chr5 (107-198)||(42480366-42480456)
chr5 (101-199)||(4432832-4432930)
chr5 (235-274)||(4425316-4425355)
chr5 (236-272)||(42480298-42480334)
[»] chr7 (2 HSPs)
chr7 (107-169)||(13471185-13471247)
chr7 (127-198)||(13471380-13471451)
[»] chr1 (1 HSPs)
chr1 (107-201)||(46830272-46830366)
[»] chr4 (2 HSPs)
chr4 (113-190)||(5051803-5051881)
chr4 (118-198)||(44550002-44550082)
[»] chr8 (1 HSPs)
chr8 (107-196)||(38432759-38432848)
[»] chr3 (4 HSPs)
chr3 (107-199)||(31180693-31180786)
chr3 (113-177)||(14417788-14417852)
chr3 (236-271)||(14418069-14418104)
chr3 (107-177)||(36189275-36189344)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 328 - 615
Target Start/End: Complemental strand, 42795799 - 42795512
Alignment:
Q  328 atattcaagactaaagggagtaattaattgcataccacggtggagaattatccttcgagactcatacgcaatgtgagagagaatgatgtgattgaagttt 427  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42795799 atattcaagactaaagggagtaattaattgcataccacggtggaaaattatctttcgagactcatacgcaatgtgagagagaatgatgtgattgaagttt 42795700  T
Q  428 tgagcatatcctttttcttggtcgggataagttctcttgattaaatcgcatcattgtttttcttctttctgatactaatatctttgatttactatcactt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42795699 tgagcatatcctttttcttggtcgggataagttctcttgattaaatcgcatcattgtttttcttctttctgatactaatatctttgatttactatcactt 42795600  T
Q  528 tccaaatttgaatgacataatactatatatttcttcttctcaaagatatgacctccaagtttttacataaatttagaacgttagtaac 615  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42795599 tccaaatttgaatgacataatactacatatttcttcttctcaaagatatgacctccaagtttttacataaatttagaacgttagtaac 42795512  T

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Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 42796118 - 42795848
Alignment:
Q  11 cacagagtatatataaaaaacttggtaaagaaagagggcaaatagagtatatactccctttgat--tgaatataagcaacaaattttattttacacattt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||    
T  42796118 cacagagtatatataaaaaacttggtaaagaaagagggcaaatagagtatatattccctttgatcttgaatataagcaacaaattttattttacactttt 42796019  T
Q  109 taagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttccatgnnnnnnn 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||           
T  42796018 taagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcatccatgagaacttgttccatgaaaagaa 42795919  T
Q  209 nnnnnnnnnntcaaattaattaaacgataatttaggaatagtaacattaaatatgatagaagttgtcaaca 279  Q
              ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42795918 aaaaataaaatcacattaattaaaggataatttaggaatagtaacattaaatatgatagaagttgtcaaca 42795848  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 19906299 - 19906400
Alignment:
Q  101 acacattttaagaaaattagttggtgtcatttatttctctcaaaattat-aaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcca 199  Q
    |||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||| |||   || ||||||||||||    
T  19906299 acaccttttaagaaaattagttggtgttatttatttctctcaaagttataaaaaaatacaattgcaatttctaaattaccctttgtgcgaacttgttcca 19906398  T
Q  200 tg 201  Q
    ||    
T  19906399 tg 19906400  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 559 - 609
Target Start/End: Complemental strand, 42795495 - 42795444
Alignment:
Q  559 tcttcttctcaaagatatgacc-tccaagtttttacataaatttagaacgtt 609  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  42795495 tcttcttctcgaagatatggccctccaagtttttacataaatttagaacgtt 42795444  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 8645254 - 8645159
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattat-aaaaaatacaattgtaatttctaaattatcctccatgagaacttgttccatg 201  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| |||  ||| ||||||||||||||    
T  8645254 tttaagaaaattagttggtgtcatttatttcactcaaagttataaaaaaatacaattgtaatttctaaattacccttaatgggaacttgttccatg 8645159  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 8645142 - 8645091
Alignment:
Q  223 attaattaaacgataatttaggaatagtaacattaaatatgatagaagttgt 274  Q
    ||||||| || | ||||||||||| |||||||||||||||||||||||||||    
T  8645142 attaatttaagggtaatttaggaagagtaacattaaatatgatagaagttgt 8645091  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 4425480 - 4425386
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttccatg 201  Q
    ||||||||||| |||||||||| ||||||||||||||| | |||||||||| || || ||||||||||||||||| ||||| |||||||||||||    
T  4425480 tttaagaaaatgagttggtgtcgtttatttctctcaaagtcataaaaaatataactgcaatttctaaattatccttcatgaaaacttgttccatg 4425386  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 39263655 - 39263743
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgt 195  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||  |||| ||||||||    
T  39263655 tttaagaaaattgattgatgtcatttatttctctcaaaattataaagaatgcaattgtaatttcaaaattacccgtcatgggaacttgt 39263743  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 42480456 - 42480366
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcc 198  Q
    ||||| |||||||||| |||||||| |||||| | ||| |||||||||||||||||||||||| ||||||||| | ||||  ||||||||||    
T  42480456 tttaacaaaattagtttgtgtcatt-atttcttttaaagttataaaaaatacaattgtaatttttaaattatcattcatggaaacttgttcc 42480366  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 4432930 - 4432832
Alignment:
Q  101 acacattttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcca 199  Q
    ||||||||||| || ||| |||| |||||||||||||||| ||| ||||||||| |||||||  ||||||||||||| |||  || | |||||||||||    
T  4432930 acacattttaaaaacatttgttgatgtcatttatttctcttaaagttataaaaattacaattacaatttctaaattaccctttataaaaacttgttcca 4432832  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 4425355 - 4425316
Alignment:
Q  235 ataatttaggaatagtaacattaaatatgatagaagttgt 274  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4425355 ataatttaggaatagtaacattaaatatgataaaagttgt 4425316  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 42480334 - 42480298
Alignment:
Q  236 taatttaggaatagtaacattaaatatgatagaagtt 272  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  42480334 taatttatgaataataacattaaatatgatagaagtt 42480298  T

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Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 13471247 - 13471185
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaattt 169  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  13471247 tttaaaaaaattaataggtgtcatttatttctctcaaaattataaaaaatacaattgtaattt 13471185  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 13471451 - 13471380
Alignment:
Q  127 tcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcc 198  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  13471451 tcatttatttctcttaaagttataaaaagtacaattgtaatttctaaattacccttcatgggaacttgttcc 13471380  T

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Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 46830272 - 46830366
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttccatg 201  Q
    ||||| ||||||||||| | |||||||||||| |||||||||||||  |||||||| || ||| ||||| ||||| |||||||||||||||||||    
T  46830272 tttaaaaaaattagttgatatcatttatttctttcaaaattataaaggatacaattatactttttaaatgatccttcatgagaacttgttccatg 46830366  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 5051803 - 5051881
Alignment:
Q  113 aaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaatta-tcctccatgagaa 190  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||  ||||||||||||    
T  5051803 aaaactagttggtgtcatttatttttctcaaagttataaagaatacaactgtaatttctaaattacccctccatgagaa 5051881  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 44550082 - 44550002
Alignment:
Q  118 tagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgttcc 198  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||| |||||||  |||||| ||  ||| ||||||||||||    
T  44550082 tagttagtgtcatttaattctctcaaaattataaaatatacaatagtaattttcaaattaccccgcataagaacttgttcc 44550002  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 38432848 - 38432759
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaattatcctccatgagaacttgtt 196  Q
    |||||||||||||  || | ||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||  |||| |||||||||    
T  38432848 tttaagaaaattaagtgatctcatttatttccctcaaagttataaagaatacaattgtaatttctaaattacccctcatgggaacttgtt 38432759  T

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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 31180786 - 31180693
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattata-aaaaatacaattgtaatttctaaattatcctccatgagaacttgttcca 199  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||  ||||||  ||  ||||||||||| ||||    
T  31180786 tttaagaaaattaattggtgtcatttatttctctcaaagttatataaaaatacaattataattttcaaattactctttatgagaacttgatcca 31180693  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 14417788 - 14417852
Alignment:
Q  113 aaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaatta 177  Q
    |||||||||||||||| ||||||| | ||||| ||||||||||||||||||||| || |||||||    
T  14417788 aaaattagttggtgtcgtttatttttttcaaagttataaaaaatacaattgtaacttttaaatta 14417852  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 14418069 - 14418104
Alignment:
Q  236 taatttaggaatagtaacattaaatatgatagaagt 271  Q
    ||||||||||||| ||||||||||||||||||||||    
T  14418069 taatttaggaataataacattaaatatgatagaagt 14418104  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 36189275 - 36189344
Alignment:
Q  107 tttaagaaaattagttggtgtcatttatttctctcaaaattataaaaaatacaattgtaatttctaaatta 177  Q
    |||||||||||||||||||| |||||||||  | |||| |||| || |||| |||| ||||||||||||||    
T  36189275 tttaagaaaattagttggtg-catttattttccacaaagttatgaagaataaaattctaatttctaaatta 36189344  T

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