View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_20 (Length: 349)
Name: NF20028_low_20
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 17782343 - 17782010
Alignment:
| Q |
1 |
tgtaaacattgctaatgatgaactatagnnnnnnn--tgaatatatgtctacgttacatatcataatgaacatgcagtagcactcttttatagcaccact |
98 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
17782343 |
tgtaaacattgctaatgatgaactatagaaaaaaaaatgaatatatgtctacgttacatatcataatgaacatgcactagcactcttttatagcaacact |
17782244 |
T |
|
| Q |
99 |
ctgttatattttggattatcttaaagccacgtccactgatacgtacattcaatttctatctctcttactttagctggtaagaaaaatctttttattcata |
198 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17782243 |
cttttatattttggattatcttaaagccacgtccactgatacgtacattcaatttctatctctcttactttaggtggtaagaaaaatctttttattcata |
17782144 |
T |
|
| Q |
199 |
attggtgtctcttttcattcaaaacaaagtacataaaatggatacaactgacataacataaccattaataaaacctatcaagataaatcctacaaaaagt |
298 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17782143 |
attggtgtctcttttcattcaaaactaagtacagaaaatggatacaactgacataacataaccattaataaaacctatcaagataaatcctacaaaaagt |
17782044 |
T |
|
| Q |
299 |
catcaacaattgtttcttctccttttcttcatag |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
17782043 |
catcaacaattgtttcttctccttttcttcatag |
17782010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 19839108 - 19839156
Alignment:
| Q |
247 |
tgacataacataaccattaataaaacctatcaagataaatcctacaaaa |
295 |
Q |
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| T |
19839108 |
tgacataacataaccattaataaaacctatcaagataaatcctacaaaa |
19839156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 19839317 - 19839356
Alignment:
| Q |
293 |
aaaagtcatcaacaattgtttcttctccttttcttcatag |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
19839317 |
aaaagtcatcaacaattgtttcttctccttttcttcatag |
19839356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 42539291 - 42539139
Alignment:
| Q |
180 |
aaaaatctttttattcataattggtgtctcttttcattcaaaacaaagtacataaaatggatacaactgacataacataaccattaataaaacctatcaa |
279 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
42539291 |
aaaactctttttattcataattggtgtctcttttcattcaaaacaaagtacagaaaatggatacagctgacataatataaccattaataaaacctatcaa |
42539192 |
T |
|
| Q |
280 |
gataaatcctacaaaaagtcatcaacaattgtttcttctccttttcttcatag |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42539191 |
gataaatcctacaaaaagtcatcaacaattgtttcttctccttttcttcatag |
42539139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 1330262 - 1330410
Alignment:
| Q |
180 |
aaaaatctttttattcataattggtgtctcttttcattcaaaacaaagtacataaaatggatacaactgacataacataaccattaataaaacctatcaa |
279 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
1330262 |
aaaactctttttattcataattggtgtctcttttcattcaaaacaaagtacagaaaatggatacagctgacataatataaccattaataaaacctatcaa |
1330361 |
T |
|
| Q |
280 |
gataaatcctacaaaaagtcatcaacaattgtttcttctccttttcttc |
328 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1330362 |
gataaatcctacaaaaagtcatcaacaattgtttcttctccttttcttc |
1330410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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