View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_24 (Length: 312)
Name: NF20028_low_24
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 1855133 - 1855333
Alignment:
| Q |
22 |
tgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacataaattccaaatttatgctcaattgta |
121 |
Q |
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| T |
1855133 |
tgtggaggtgtaaaagttccatatccatttggcataggaaattcaacagcacaagatcatacaccatgttacataaattccaaatttatgctcacttgta |
1855232 |
T |
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| Q |
122 |
cagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcacgtctctgtac |
221 |
Q |
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| T |
1855233 |
cagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcacatctctgtac |
1855332 |
T |
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| Q |
222 |
g |
222 |
Q |
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| T |
1855333 |
g |
1855333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 1844992 - 1844913
Alignment:
| Q |
16 |
tatacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacat |
95 |
Q |
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| T |
1844992 |
tatacttgtggagatataaacattccatatccatttggcataggaaattcaacaacacaagatcatacaccattttacat |
1844913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 1818039 - 1817866
Alignment:
| Q |
38 |
ttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttacataaattccaaatttatgctcaattgtacagacaattccaaatt |
137 |
Q |
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| T |
1818039 |
ttccatatccatttggcataggaaattcaacagcacaacatcatacaccatgttacatggattcaaaatttgaactcacctgtgtaaacaactcaaaatt |
1817940 |
T |
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| Q |
138 |
aatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcgtctcac |
211 |
Q |
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| T |
1817939 |
aattcggcctaggggtatcgaagtcctggacataaatccccaaggtcaagtggaaatgaaattttcagtctcac |
1817866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 1855362 - 1855398
Alignment:
| Q |
257 |
ccgaaaaagcaaataaaccttctctcagagtttcttc |
293 |
Q |
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| T |
1855362 |
ccgaaaaagcaaataaaccttctctcagagtttcttc |
1855398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 37566744 - 37566845
Alignment:
| Q |
106 |
tttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcg |
205 |
Q |
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|||| ||||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
37566744 |
tttaagctcacttgtacaaacaactccaaattaatccgtggtaagaatctacaagtcctagacataaatccgcacggtcaaatggaaatgaaatttttcg |
37566843 |
T |
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| Q |
206 |
tc |
207 |
Q |
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|| |
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| T |
37566844 |
tc |
37566845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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