View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_30 (Length: 272)
Name: NF20028_low_30
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 1855122 - 1854856
Alignment:
| Q |
1 |
cagccaggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgctaatgcagcaagtattattaatacttgcagga |
100 |
Q |
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| T |
1855122 |
cagcctggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgctaatgcagcaagtattattaatacttgcagga |
1855023 |
T |
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| Q |
101 |
ccttcatttttaaattggagtactgactgacttgtggcctagagtaagggtgtttcgttatttataataaaaacccttccaaattttcatggtattttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855022 |
ccttcatttttaaattggagtactgactgacttgtggcctggagtaagggtgtttcgttatttataataaaaacccttccaaattttcatggtattttgc |
1854923 |
T |
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| Q |
201 |
taatttaaataaaagttgcattgacttgcaagttgcatggaagacctgaccatatattcttctctct |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1854922 |
taatttaaataaaagttgcattgacttgcaagttgcatggaagacctgaccatatattcttctctct |
1854856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1818066 - 1818102
Alignment:
| Q |
1 |
cagccaggtaggacttgtttaggttgatcagatgcaa |
37 |
Q |
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| T |
1818066 |
cagcctggtaggacttgtttaggttgatcagatgcaa |
1818102 |
T |
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