View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20028_low_31 (Length: 267)

Name: NF20028_low_31
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20028_low_31
NF20028_low_31
[»] chr3 (3 HSPs)
chr3 (1-256)||(13411355-13411614)
chr3 (133-249)||(20000090-20000206)
chr3 (140-200)||(8821083-8821143)
[»] chr1 (5 HSPs)
chr1 (80-255)||(27120819-27120998)
chr1 (133-249)||(3400007-3400123)
chr1 (136-200)||(42606285-42606349)
chr1 (89-200)||(41087928-41088043)
chr1 (130-188)||(41092681-41092739)
[»] chr5 (1 HSPs)
chr5 (130-200)||(5539091-5539161)
[»] chr4 (4 HSPs)
chr4 (133-207)||(20634509-20634583)
chr4 (133-207)||(40287374-40287448)
chr4 (141-195)||(36010954-36011008)
chr4 (131-207)||(16739316-16739392)
[»] chr8 (3 HSPs)
chr8 (138-255)||(38810078-38810195)
chr8 (133-182)||(33933559-33933608)
chr8 (140-207)||(1807272-1807339)
[»] scaffold0001 (1 HSPs)
scaffold0001 (133-188)||(509582-509637)
[»] chr6 (1 HSPs)
chr6 (131-210)||(22749229-22749308)
[»] chr2 (1 HSPs)
chr2 (140-255)||(3470257-3470374)
[»] chr7 (1 HSPs)
chr7 (133-255)||(18573118-18573235)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 13411614 - 13411355
Alignment:
Q  1 gtatgagtcaaaagattaccaaatggaccaacatatttccatgtgttacaaaaatgttataaaattagacaggtgcagatcgaccttatgaagaacaaac 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||||    
T  13411614 gtatgagtcaaaagattaccaattggaccaacatatttccatgtgttacaaaaatgttataaaattagacagatataggtcgaccttatgaagaacaaac 13411515  T
Q  101 atctacaccttgatagattttacgcttggt----tgtggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaa 196  Q
    |||||||||||||||| ||| |||||||||    |||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  13411514 atctacaccttgataggtttgacgcttggtggactgtggactggtatggaggatcataccacgtggactctcctatatattgactaatcaacgtgtacaa 13411415  T
Q  197 ctcagtttgattgtaagggtcgtgtgagttccacttgcttagcccagcttgattgttcat 256  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  13411414 ctcagtttgattgtatgggtcgtgtgagttccacttgcttagctcaggttgattgttcat 13411355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 20000090 - 20000206
Alignment:
Q  133 tggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgattgtaagggtcgtgtgagttccactt 232  Q
    |||| |||||||||||||||||||||||||||||   |||||||| |||| ||||| |||||||||||  ||||| ||   ||||  ||||| ||||| |    
T  20000090 tggactggtatggaggaccataccacgtggactcctatatacattgactattcaacatgtacaactcaacttgatcgttcaggtcacgtgagctccacct 20000189  T
Q  233 gcttagcccagcttgat 249  Q
    ||||||| |||||||||    
T  20000190 gcttagctcagcttgat 20000206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 8821143 - 8821083
Alignment:
Q  140 gtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactca 200  Q
    |||||||||||||| ||||||||||||||||||||||| |||| ||| | | |||||||||    
T  8821143 gtatggaggaccatgccacgtggactctcctatacattgactattcaccatatacaactca 8821083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 255
Target Start/End: Original strand, 27120819 - 27120998
Alignment:
Q  80 tcgaccttatgaagaacaaacatctacaccttgatagattttacgcttggt----tgtggattggtatggaggaccataccacgtggactctcctataca 175  Q
    |||| |||||||||||||||| |||||| ||||  ||  || | |||||||    ||||||  |||||||||||||||||||||||||||||||| ||||    
T  27120819 tcgatcttatgaagaacaaacgtctacatcttggcaggcttgatgcttggtggactgtggaccggtatggaggaccataccacgtggactctcctttaca 27120918  T
Q  176 tttactaatcaacgtgtacaactcagtttgattgtaagggtcgtgtgagttccacttgcttagcccagcttgattgttca 255  Q
    || |||| ||||| ||||||||| || |||||  | | |||| |||||| ||||| |||||||| ||||||||| |||||    
T  27120919 ttgactattcaacatgtacaacttagcttgatcattaaggtcatgtgagctccacctgcttagctcagcttgatcgttca 27120998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 3400007 - 3400123
Alignment:
Q  133 tggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgattgtaagggtcgtgtgagttccactt 232  Q
    |||| ||||||||||||||||||||||||||||||  |||||||| |||| ||||| ||||||||| || ||||| ||   ||||  ||||| ||||| |    
T  3400007 tggactggtatggaggaccataccacgtggactcttatatacattgactattcaacatgtacaacttagcttgatcgttcaggtcacgtgagctccacct 3400106  T
Q  233 gcttagcccagcttgat 249  Q
    ||||||| |||||||||    
T  3400107 gcttagctcagcttgat 3400123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 42606285 - 42606349
Alignment:
Q  136 attggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactca 200  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||    
T  42606285 attggtatagaggaccataccacgtggactctcctatacattgactattcaatatgtacaactca 42606349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 41088043 - 41087928
Alignment:
Q  89 tgaagaacaaacatctacaccttgatagattttacgcttggt----tgtggattggtatggaggaccataccacgtggactctcctatacatttactaat 184  Q
    |||||||||||| ||||| ||||||  || || ||| |||||    |||||| |||||| |||||||||||||| |||||| | ||||||||| |||| |    
T  41088043 tgaagaacaaacgtctacgccttgacggacttgacgtttggtggactgtggactggtatagaggaccataccacatggactttactatacattgactatt 41087944  T
Q  185 caacgtgtacaactca 200  Q
    |||| ||| |||||||    
T  41087943 caacatgtccaactca 41087928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 41092739 - 41092681
Alignment:
Q  130 ttgtggattggtatggaggaccataccacgtggactctcctatacatttactaatcaac 188  Q
    ||||||| |||||| |||||||||||||| |||||| | ||||||||| |||| |||||    
T  41092739 ttgtggactggtatagaggaccataccacatggactttactatacattgactattcaac 41092681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 5539161 - 5539091
Alignment:
Q  130 ttgtggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactca 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  5539161 ttgtggactggtatggaggaccataccacgtggactctcctatacattgactattcaacatgtacaactca 5539091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 20634509 - 20634583
Alignment:
Q  133 tggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgat 207  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||||||||    
T  20634509 tggactggtatggaggaccataccacatggactctcctatacattgaatattcaacatgtacaactcagtttgat 20634583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 40287448 - 40287374
Alignment:
Q  133 tggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgat 207  Q
    |||| |||||| || ||||||||||| |||||||| ||||||||| |||| ||||| ||||||||||||||||||    
T  40287448 tggaatggtatcgaagaccataccacatggactcttctatacattcactattcaacatgtacaactcagtttgat 40287374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 36011008 - 36010954
Alignment:
Q  141 tatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtaca 195  Q
    |||||||||||||||||||||||| ||  |||||||| |||| ||||| ||||||    
T  36011008 tatggaggaccataccacgtggacccttttatacattgactattcaacatgtaca 36010954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 16739392 - 16739316
Alignment:
Q  131 tgtggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgat 207  Q
    |||||| | ||||||||||||||| ||| || |||||||||| |||| | || ||||  |||||||||||| |||||    
T  16739392 tgtggactagtatggaggaccatatcacatgtactctcctatgcattgattattcaaattgtacaactcagcttgat 16739316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 38810195 - 38810078
Alignment:
Q  138 tggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgattgtaagggtcgtgtgagttccacttgctta 237  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||| ||||  ||||| ||   ||||  ||||| ||||  ||||||    
T  38810195 tggtatggaggaccatatcacgtggactctcctatacattgactattcaacatgtacagctcaacttgatcgttcaggtcacgtgagctccatctgctta 38810096  T
Q  238 gcccagcttgattgttca 255  Q
    || ||||||||| |||||    
T  38810095 gctcagcttgatcgttca 38810078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 33933608 - 33933559
Alignment:
Q  133 tggattggtatggaggaccataccacgtggactctcctatacatttacta 182  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  33933608 tggattggtatggaaaaccataccacgtggactctcctatacattgacta 33933559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 1807272 - 1807339
Alignment:
Q  140 gtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgat 207  Q
    ||||| |||||||||||||||||||||| |||||| || |||| ||||| |||||| |||| ||||||    
T  1807272 gtatgtaggaccataccacgtggactcttctataccttgactattcaacatgtacatctcaatttgat 1807339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 509582 - 509637
Alignment:
Q  133 tggattggtatggaggaccataccacgtggactctcctatacatttactaatcaac 188  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||| |||| |||||    
T  509582 tggactggtatggaagaccataccacgtggactctcatatacattgactattcaac 509637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 22749308 - 22749229
Alignment:
Q  131 tgtggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgattgt 210  Q
    |||||| | ||||||||||||||| ||||||||||||| | || ||| |||| ||||| ||||||||| || ||||||||    
T  22749308 tgtggactagtatggaggaccatatcacgtggactctcttttatattgactattcaacatgtacaactaagcttgattgt 22749229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 3470257 - 3470374
Alignment:
Q  140 gtatggaggaccataccacgtgga--ctctcctatacatttactaatcaacgtgtacaactcagtttgattgtaagggtcgtgtgagttccacttgctta 237  Q
    |||||||||||||||||||| |||  |||||| ||||||| |||| ||||  |||| | ||||||||||| |||  ||||  ||||| ||||| || |||    
T  3470257 gtatggaggaccataccacgcggactctctccaatacattaactattcaatatgtatagctcagtttgatcgtacaggtcacgtgagctccacctgatta 3470356  T
Q  238 gcccagcttgattgttca 255  Q
    || ||||||||| |||||    
T  3470357 gctcagcttgatcgttca 3470374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 18573118 - 18573235
Alignment:
Q  133 tggattggtatggaggaccataccacgtggactctcctatacatttactaatcaacgtgtacaactcagtttgattgtaagggtcgtgtgagttccactt 232  Q
    |||| ||||||  |||||||||||||||||||      ||| ||| |||| ||||| |||||||||||| ||||| |||  ||||  ||||| ||||| |    
T  18573118 tggactggtataaaggaccataccacgtggaca-----atatattgactattcaacatgtacaactcagcttgatcgtacaggtcacgtgagctccacct 18573212  T
Q  233 gcttagcccagcttgattgttca 255  Q
    ||||||| ||||||||| |||||    
T  18573213 gcttagctcagcttgatcgttca 18573235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University