View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_33 (Length: 258)
Name: NF20028_low_33
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 34985281 - 34985058
Alignment:
| Q |
11 |
cagagaattaaggtcttataatccttgaaaggaaaactctcacaacatgttgcatacaatacaatacatcagaaataactcactcaaatctcaaatagaa |
110 |
Q |
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| T |
34985281 |
cagagaattaaggtcttataatccttgaaaggaaaactctcacaacatgttgcatacaatacaatacatcacaaataactcactcaaat-------agaa |
34985189 |
T |
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| Q |
111 |
aattacaaagtatcctgaatcaataactgatgtttcatatgccaaatcaagaacgtaaagatgccactttttcaaaagtccacttggagtaatcaaattc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34985188 |
aattacaaagtatcctgaatcaataactgatgtttcatatgccaaatcaagaacataaagatgccactttttcaaaagtccacttggagtaatcaaattc |
34985089 |
T |
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| Q |
211 |
catcacccatgaaaccagaaacctacagatt |
241 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34985088 |
catcacccatgaaaccagaaacctacagatt |
34985058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 34978077 - 34977949
Alignment:
| Q |
11 |
cagagaattaaggtcttataatccttgaaaggaaaactctcacaacatgttgcatacaatacaatacatcagaaataactcactcaaatctcaaatagaa |
110 |
Q |
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||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||| |||| ||||| |||||||||||||||| || |
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| T |
34978077 |
cagagaattaaggacttgcaatccttgaaaggaaaactc--acaacatgttgcaaacaatac-----atcacaaata----actcaaatctcaaataaaa |
34977989 |
T |
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| Q |
111 |
aattacaaagtatcctgaatcaataactgatgtttcatat |
150 |
Q |
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| T |
34977988 |
aataacaaagtatcttgaatcaataactgaggttccatat |
34977949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 34977894 - 34977826
Alignment:
| Q |
149 |
atgccaaatcaagaacgtaaagatgccactttttcaaaagtccacttggagtaatcaaattccatcacc |
217 |
Q |
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| T |
34977894 |
atgccaaatcaagaacataaggatgccacttttgcaaaagtccaattcgagaaatcaaattccatcacc |
34977826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 34991841 - 34991775
Alignment:
| Q |
149 |
atgccaaatcaagaacgtaaagatgccactttttcaaaagtccacttggagtaatcaaattccatca |
215 |
Q |
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| T |
34991841 |
atgccaaatcaagaacataaggatgccacttttgcaaaagtccacttcgagaaaacaaattccatca |
34991775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 2303460 - 2303527
Alignment:
| Q |
149 |
atgccaaatcaagaacgtaaagatgccactttttcaaaagtccacttggagtaatcaaattccatcac |
216 |
Q |
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| T |
2303460 |
atgcctaatgaagaacataaggatgccacttttgcaaaagtccacttcgagaaatctaattccatcac |
2303527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 34991985 - 34991949
Alignment:
| Q |
11 |
cagagaattaaggtcttataatccttgaaaggaaaac |
47 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
34991985 |
cagagaattaaggtcttacaatccttgaaaggaaaac |
34991949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 34991947 - 34991889
Alignment:
| Q |
92 |
actcaaatctcaaatagaaaattacaaagtatcctgaatcaataactgatgtttcatat |
150 |
Q |
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|||||||||| ||||| |||| |||||||||| ||||||||||||||| ||| ||||| |
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| T |
34991947 |
actcaaatctgaaataaaaaacaacaaagtatcttgaatcaataactgaggttccatat |
34991889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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