View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_39 (Length: 215)
Name: NF20028_low_39
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 32968150 - 32967942
Alignment:
| Q |
7 |
attacattaacagtaaatccataaaattatgatgtttcttgagtaagcattttaagacaaattgtatagctcatgagtgaacttactgcaagtgcgagac |
106 |
Q |
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| T |
32968150 |
attacattaacagtaaatccataaaattatgatgtttcttgagtaagcattttaagacaaattgtatagctcatgagtgaacttactgcaagtgcgagac |
32968051 |
T |
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| Q |
107 |
cgtactgcacagagnnnnnnntaacaccgaagaatgcaaccaacaacacaaggaaatcaaatttgtcgatcttccaaatgagataagcagcagagatatc |
206 |
Q |
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| T |
32968050 |
cgtactgcacagagaaaaaaataacaccgaagaatgcaaccaacaacacaaggaaatcaaatttgtcgatcttccaaatgagataagcagcagagatatc |
32967951 |
T |
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| Q |
207 |
aatgagacc |
215 |
Q |
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| T |
32967950 |
aatgagacc |
32967942 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 32958719 - 32958655
Alignment:
| Q |
148 |
aacaacacaaggaaatcaaatttgtcgatcttccaaatgagataagcagcagagatatcaatgag |
212 |
Q |
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|||| ||||||||| ||||||||||| |||||||||||| || ||||||| | ||||||||||| |
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| T |
32958719 |
aacatcacaaggaagtcaaatttgtctatcttccaaatgtgacaagcagcgggtatatcaatgag |
32958655 |
T |
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