View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_4 (Length: 566)
Name: NF20028_low_4
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Original strand, 21902728 - 21903266
Alignment:
| Q |
18 |
ttttgcgcatgttcatgagcaattatgagttccctcttatcgtgttctatttctttcaaaggaaaaacactagtgttggctcaaggcaagaaaagtgtcg |
117 |
Q |
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| T |
21902728 |
ttttgcgcatgttcatgagcaattatgagttcgctcttatcgtgttctatttctttcaaaggaaaaacaccagtgttggctcaaggcaagaaaagtgtcg |
21902827 |
T |
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| Q |
118 |
aacgaatagcaaacctcaaggtagcactgatgataaagtaagtgaccattataagtgaaaatttcaattctgtttcattttccttcacgaataagtcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21902828 |
aacgaatagcaaacctcaaggtagcactgatgataaggtaagtgatcattataagtgaaaatttcaattctgtttcattttccttcacgaataagtcatt |
21902927 |
T |
|
| Q |
218 |
gattatatatatgttgtgctcagaaactctcaagtaaaggagaaagaggtgtcttccgaaatatcaaagtatatcccttggtaattcattgagagcatgt |
317 |
Q |
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| T |
21902928 |
gattatatatatgttgtgctcagaaactctcaagtaaaggagaaagaggtgtcttccgaaatatcaaagtatatcccttggtaattcattgagagcatgt |
21903027 |
T |
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| Q |
318 |
ttattaattgaagtttctcatgtttgtcatctgtggatcgtgtacaacatcatcttctacaaattcctaatgcatatcgtaaaatatttattatttgttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21903028 |
ttattaattgaagtttctcatgtttgtcatctgtggatcgtgtacaacatcatcttctacaaattcctaatgcatatcgtaaaatatttattgtttgttc |
21903127 |
T |
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| Q |
418 |
aaattcggctacgctataaatgatatagcgtcgctgtttgacaacattggtttgtgtgtctttcattgttattcatttttcttcttcttcttaggaatca |
517 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
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| T |
21903128 |
aaattcggctacactataaatgatatagcgtcgctgtttgacaacattggtttgtgtctcttccgttgttattcatttttcttcttcttcttaggaatca |
21903227 |
T |
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| Q |
518 |
aacgacaagagatttaccgatgaaccaccaatagaatta |
556 |
Q |
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| T |
21903228 |
aacgacaagagatttaccgatgaaccaccaacagaatta |
21903266 |
T |
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