View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20028_low_5 (Length: 566)
Name: NF20028_low_5
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 13 - 549
Target Start/End: Complemental strand, 5357830 - 5357292
Alignment:
| Q |
13 |
aagaaaattgaagaattatattatatggaaggcattccatatacaagtgttctagcatctcttatgtgtgctatggtcggtacttgtcctgatatagcat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5357830 |
aagaaaattgaagaattatattatatggaaggcattgcatatacaagtgttttagcatctcttatgtgtgctatggtcagtacttgtcctgatatagcat |
5357731 |
T |
|
| Q |
113 |
atgcagtgagtttagtatccagatttac--aaaaccaactatatttttaaggtgcgtcaaagtatctgacccacgtcagtgtcttcgtaagaacgatact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5357730 |
atgcagtgagtttagtatccagatttaccaaaaaccaactatatttttaaggtgcgtcaaagtatctgacccacgtcagtgtcttcgtaagaacgatact |
5357631 |
T |
|
| Q |
211 |
gacaagtgtgattagaaaagtaaacttcaaataactaaatgtaaacttcaaataacactagctaatagttatacaacaagtatttttctcattcgattga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5357630 |
gacaagtgtgattagaaaagtaaacttcaaataactaaatgtaaacttcaaataacactagctaatagttatacaacaagtatttttctcatttgattga |
5357531 |
T |
|
| Q |
311 |
taaatctaaaataaagagttaagtcaactaaacttgtagattgatataacatgtaaccgaatattttgtaaccaaatagttgaatgtgagattctaatcc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5357530 |
taaatctaaaataaagagttaagtcaactaaacttgtagattgatataacatgtaaccgaatattttgtaaccaaatagttgaatgtgagattctaatcc |
5357431 |
T |
|
| Q |
411 |
gcatcaaaccatgctctccgaattaaatatagaaggatcagacacattaccataaaatccaataaatccccttgaaagtcgaatacatgaaataatagta |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5357430 |
gcatcaaaccatgctctccgaattaaatatagaaggatcagacacattaccataaaatccaataaatccccttgaaagtcgaatacatgaaataatagta |
5357331 |
T |
|
| Q |
511 |
tactagaatgcgggaaaataaatcatcttaaacatgttt |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5357330 |
tactagaatgcgggaaaataaatcatcttaaacatgttt |
5357292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 338 - 549
Target Start/End: Complemental strand, 5370210 - 5369997
Alignment:
| Q |
338 |
ctaaacttgtagattgatataacatgtaaccgaatattttgtaaccaaatagttgaatgtgagattctaatccgcatcaaaccatgctctccgaattaaa |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
5370210 |
ctaaacttgtagattgatataacatgtaaccgaatattttgtaagtaaatagttgaatgtgagattctaatccaaatcaaaccatgctctcggaattaaa |
5370111 |
T |
|
| Q |
438 |
tatagaaggatcagacacattaccat-aaaatccaataaatccccttgaaagtcgaatacatgaaataata-gtatactagaatgcgggaaaataaatca |
535 |
Q |
| |
|
||||||| ||||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |
|
|
| T |
5370110 |
tatagaaagatcaaacacattatcataaaaatccaataaatccctttgaaagtcgaatacatgaattaataggtatactagaatgcgggaaaataaataa |
5370011 |
T |
|
| Q |
536 |
tcttaaacatgttt |
549 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
5370010 |
tctttaacatgttt |
5369997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 5370390 - 5370279
Alignment:
| Q |
141 |
aaaaccaactatatttttaaggtgcgtcaaagtatctgacccacgtcagtgtcttcgtaagaacgatactgacaagtgtgattagaaaagtaaacttcaa |
240 |
Q |
| |
|
||||||||| ||||||||||| || || |||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
5370390 |
aaaaccaaccatatttttaagatgtgtgaaagtacctgac--acgtcagtgtcttcgtaagaacgacactgacaagtgtgattagaaaaagtaacttcaa |
5370293 |
T |
|
| Q |
241 |
ataactaaatgtaa |
254 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
5370292 |
ataactagatgtaa |
5370279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 5372539 - 5372487
Alignment:
| Q |
34 |
tatatggaaggcattccatatacaagtgttctagcatctcttatgtgtgctat |
86 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
5372539 |
tatatggaaggtattccatatacaagtgttttagcatctcttatgtatgctat |
5372487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 505
Target Start/End: Complemental strand, 5364139 - 5364008
Alignment:
| Q |
382 |
ccaaatagttgaatgtgagattctaatccgcatcaaacc--atgctctccgaattaaatatagaaggatcagacacattaccataaaa--tccaataaat |
477 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||| | |||||||| |||||||||||||||||||| ||| || ||| || | |||||||||| |
|
|
| T |
5364139 |
ccaaatagttggatatgagattctaatccacatcatatagaatgctctctaaattaaatatagaaggatcaaacagatgacccaaacaattccaataaat |
5364040 |
T |
|
| Q |
478 |
----ccccttgaaagtcgaatacatgaaataa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5364039 |
aaatccccttgaaagtcgaatacatgaaataa |
5364008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 7179992 - 7179939
Alignment:
| Q |
403 |
tctaatccgcatcaaaccatgctctccgaattaaatatagaaggatcagacaca |
456 |
Q |
| |
|
|||||||| ||| |||||||||||| | ||||||||| |||||||||| ||||| |
|
|
| T |
7179992 |
tctaatccacataaaaccatgctctgcaaattaaataaagaaggatcaaacaca |
7179939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 7024300 - 7024231
Alignment:
| Q |
324 |
aagagttaagtcaactaaa-cttgtagattgatataacatgtaaccgaatattttgtaaccaaatagttg |
392 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
7024300 |
aagagttaagataactaaaacctgtagattgatataacatgtagcccacgattttgtaaccaaatagttg |
7024231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University