View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_6 (Length: 564)
Name: NF20028_low_6
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 4354202 - 4353960
Alignment:
| Q |
10 |
aagaatattaagcaaatgtagcagaaaaagctcaatattcaaagtaattaaaactccaatgacacaaaaacaagcaacacaatctacaacacggtgagtt |
109 |
Q |
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| T |
4354202 |
aagaaaattaagcaaatgtagcagaaaaagctcaatattcaaagtaattaaaactccaatgacacaaaaacaaacaacacaatctacaacacggtgagtt |
4354103 |
T |
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| Q |
110 |
aacatgaatccaatcctttactatagaaacaaaaccaaaatgacccatcaatagatttcacataatcgcaactcaaaatcataaatttatgaaaaccatt |
209 |
Q |
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| T |
4354102 |
aacatgaatccaatcctttactatagaaacaaaaccaaaatgacccatcaatagatttcacataatcgcaactcaaaatcataaatttatgaaaaccatt |
4354003 |
T |
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| Q |
210 |
cacttcaatgaacaaaatcaatcaaattcaaacctcatccttt |
252 |
Q |
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| T |
4354002 |
cacttcaatgaacaaaatcaatcaaattcaaacctcatccttt |
4353960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 313 - 548
Target Start/End: Complemental strand, 4353899 - 4353663
Alignment:
| Q |
313 |
gtgtcttatctaagctaaaggaacaagctttatgatccaaacataatcaccaaaccctaaaatgaagagttacacatgcaattggaaagaacaataaaag |
412 |
Q |
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| T |
4353899 |
gtgtcttatctaagccaaaggaacaagctttatgatccaaacataatcaccaaaccctaaaatgaagagttacacatgcaattggaaagaacaataaaag |
4353800 |
T |
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| Q |
413 |
ggtatttgagaaaacagcaaaatcaagaacaaacaacaagaaagtgagaaattttattgtaaaagttgcaagaaatataggtaatcttcacctttaagta |
512 |
Q |
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| T |
4353799 |
ggtatttgagaaaacagcaaaatcaagaacaaacaacaagaaagtgagaaattttattgtaaaagttgcaagaaatataggcaatcttcacctttgagta |
4353700 |
T |
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| Q |
513 |
ggggtaatttggtccaacaaaagcaca-aaatgaaga |
548 |
Q |
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| T |
4353699 |
ggggtaatttggtccaagaaaagcacagaaatgaaga |
4353663 |
T |
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