View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20028_low_7 (Length: 504)
Name: NF20028_low_7
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_7 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Complemental strand, 33803140 - 33802658
Alignment:
| Q |
15 |
tattggaggacaaattgaggttgcacctgttgtagaatccgattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattccgtttcgtca |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33803140 |
tattggaggacaaattgaagttgcacctgttgtagaatccgattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattccgtttcgtca |
33803041 |
T |
|
| Q |
115 |
ttcaacgatgaaattaacaccactactactggtgctgggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
33803040 |
ttcaacgatgaaattaacaccactactactggtgctaggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcgcctgatccattca |
33802941 |
T |
|
| Q |
215 |
ctagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33802940 |
ctagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaa |
33802841 |
T |
|
| Q |
315 |
taacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33802840 |
taacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtct |
33802741 |
T |
|
| Q |
415 |
gaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
33802740 |
gaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcagcaacaagagaagcaacatgttcttcttctca |
33802658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Complemental strand, 33731761 - 33731279
Alignment:
| Q |
15 |
tattggaggacaaattgaggttgcacctgttgtagaatccgattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattccgtttcgtca |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
33731761 |
tattggaggacaaattgaagttgcacctgttgtagaatccgattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattctgtttcgtca |
33731662 |
T |
|
| Q |
115 |
ttcaacgatgaaattaacaccactactactggtgctgggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
33731661 |
ttcaacgatgaaattaacaccactactactggtgctaggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcgcctgatccattca |
33731562 |
T |
|
| Q |
215 |
ctagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaa |
314 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33731561 |
ctagaggggaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacacactcttcctcctccttttcatccttatcaagacaatgtcaa |
33731462 |
T |
|
| Q |
315 |
taacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33731461 |
taacatgtcttctttacctacaacaacattttgggatcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtct |
33731362 |
T |
|
| Q |
415 |
gaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
33731361 |
gaaattaatagctctcctggtggtcctgcatcatttctatatccctctgcagcaacaagagaagcaacaagttcttcttctca |
33731279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 55 - 431
Target Start/End: Original strand, 6145414 - 6145784
Alignment:
| Q |
55 |
gattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattccgtttcgtcattcaacgatgaaattaacaccactactactggtgctggga |
154 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||| | |||||||| |||||| |||||||||||||||||| || |||||||||||||| |||| || ||| |
|
|
| T |
6145414 |
gattatccaagaagtggagttgttgcaggaaacaatagtaatgtgaattccatttcgtcattcaacgatggaactaacaccactactattggtactagga |
6145513 |
T |
|
| Q |
155 |
atgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatga |
254 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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|
| T |
6145514 |
atgatgagttgtttcgtgctaattcattgttcaagaggaggagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaagttgacga |
6145613 |
T |
|
| Q |
255 |
aaggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcat |
354 |
Q |
| |
|
||| | |||||||||| |||| |||||||||||||||||| | |||||||||||||| ||||||||||| | || | |||||||||||||||| |
|
|
| T |
6145614 |
aagctcaagcagaagacacacttttcctcctccttttcatcttcatcaagacaatgtc---aacatgtcttcatcac---aagaaacattttgggatcat |
6145707 |
T |
|
| Q |
355 |
ttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcc |
431 |
Q |
| |
|
||| | ||| ||||||||| |||| || | ||||||| ||||||| |||| | || ||| |||||||||||| |||| |
|
|
| T |
6145708 |
ttcctgatgaatgaagatgatgatataaatgcaggaccaagtagtgctacaaatcggtccgaaattaatagccctcc |
6145784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 56 - 431
Target Start/End: Original strand, 6125996 - 6126368
Alignment:
| Q |
56 |
attatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattccgtttcgtcattcaacgatgaaattaacaccactactactggtgctgggaa |
155 |
Q |
| |
|
||||||||||||||| | ||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||| |||| || |||| |
|
|
| T |
6125996 |
attatcaaagaagtgcatttgttggaggaaataatagtaatgtgaattccatttcgtcattcaacgatgaaattaacaccattactattggtactaggaa |
6126095 |
T |
|
| Q |
156 |
tgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaa |
255 |
Q |
| |
|
||||||||||| || |||||||||| || ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
6126096 |
tgatgagttgtttcgtgctaattcattgttaaagagaaatagatcacccgatccattcattagaggtgaaacttctaatcaaggttcacaagttgacaga |
6126195 |
T |
|
| Q |
256 |
aggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatt |
355 |
Q |
| |
|
|| | | ||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||| | ||||||||||||| | | |
|
|
| T |
6126196 |
agctcaatcagaagacgcactcttcctcctccttttcatattcatcaagacaatgtc---aacacgtcttctttaccgcaagaaacattttgggataagt |
6126292 |
T |
|
| Q |
356 |
tcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcc |
431 |
Q |
| |
|
|| | ||| ||||||||| |||| |||| ||||||| ||||||| ||||||||| || |||||||||||| |||| |
|
|
| T |
6126293 |
tcttgatgtatgaagatgctgatatagatgcaggaccaagtagtgctactactcagttcgaaattaatagccctcc |
6126368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 6151818 - 6152030
Alignment:
| Q |
39 |
acctgttgtagaatccgattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattccgtttcgtcattcaacgatgaaattaacaccact |
138 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||| ||||| |||||| |||||||||| |||||| |||| ||||||| ||||| ||||||| ||||| |
|
|
| T |
6151818 |
acctgttgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattcagcgatggaattaaccccact |
6151917 |
T |
|
| Q |
139 |
actactggtgctgggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaag |
238 |
Q |
| |
|
|||||||| || | ||||||||||||| || |||| |||| || |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6151918 |
gctactggtactagaaatgatgagttgtttcgtgctagttcacggttaaagagaagtagatcacatgatccattaactagaggtgaaacttctaatcaag |
6152017 |
T |
|
| Q |
239 |
gttcacaaattga |
251 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
6152018 |
gtttacaagttga |
6152030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 6138494 - 6138621
Alignment:
| Q |
187 |
aagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctc |
286 |
Q |
| |
|
|||||||| |||||||| || |||| | |||||||||||||||| |||||||||||| ||||||| | | ||| |||||||||||||||||| || |
|
|
| T |
6138494 |
aagagaagcagatcaccaaatgcattaaatagaggtgaaacttctgctcaaggttcacagggtgatgaaggttctagtagaagacgcactcttccttctt |
6138593 |
T |
|
| Q |
287 |
cttttcatccttatcaagacaatgtcaa |
314 |
Q |
| |
|
||||||| || |||||||||| ||||| |
|
|
| T |
6138594 |
tttttcatactcatcaagacaacgtcaa |
6138621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 34283397 - 34283454
Alignment:
| Q |
440 |
ctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | || |||||||||||||||| |
|
|
| T |
34283397 |
ctgcatcatttctatatccctctgcagcaataagaggagcagcaagttcttcttctca |
34283454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 6138376 - 6138412
Alignment:
| Q |
81 |
aggaaatagtagtaatgctaattccgtttcgtcattc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
6138376 |
aggaaatagtagtaatgctaattccatttcatcattc |
6138412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 10343426 - 10343368
Alignment:
| Q |
365 |
atgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaat |
423 |
Q |
| |
|
|||||| ||||||||||| ||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
10343426 |
atgaagttgttgatgtaggcgcaggaccaaatagtactactactctgtctcaaattaat |
10343368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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