View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20028_low_8 (Length: 498)
Name: NF20028_low_8
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20028_low_8 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 62 - 476
Target Start/End: Complemental strand, 41674230 - 41673816
Alignment:
| Q |
62 |
cttttctatttagattctcaaattatacccttcttcggctcttataaaaagggcactcgaaccacgatctaaaacaagtcccatagtagtctttcctttc |
161 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41674230 |
cttttctatttaaattctaaaattatacccttcttcggctcttataaaaagggcactcgaaccacgatctaaaacaagtcccatagtagtctttcctttc |
41674131 |
T |
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| Q |
162 |
ttccaatcccacatttcttcttttctttcatatagctagctaggaaataaaatgggtaccaaagttccaattatactctttgtttttgtaatgttgtgtg |
261 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41674130 |
ttccaaacccacatttcttcttttctttcatatagctagctaggaaataaaatgggtaccaaagttccaattatactctttgtttttgtaatgttgtgtg |
41674031 |
T |
|
| Q |
262 |
ctttaagttcagccattccaagcaaaagaaagtcatacacaccatgcaaaaacatggtcctttattttcatgacataatttacaatggaatgaatgcagc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41674030 |
ctttaagttcagccattccaagcaaaagaaagtcatacacaccatgcaaaaacatggtcctttattttcatgacataatttacaatggaatgaatgcagc |
41673931 |
T |
|
| Q |
362 |
taatgcaacatctgcaatagttgcagcaccacacggtgctaatttaactatattggcacctcaattccactttggtaacatagcagtttttgatgaccct |
461 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41673930 |
taatgcaacatcttcaatagttgcagcaccacaaggtgctaatttaactatattggcacctcaattccactttggtaacatagcagtttttgatgaccct |
41673831 |
T |
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| Q |
462 |
atcacattggataac |
476 |
Q |
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| T |
41673830 |
atcacattggataac |
41673816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 237 - 472
Target Start/End: Complemental strand, 27147753 - 27147519
Alignment:
| Q |
237 |
ctctttgtttttgtaatgttgtgtgctttaagttcagccattccaagcaaaagaaagtcatacacaccatgcaaaaacatggtcctttattttcatgaca |
336 |
Q |
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|||||||||||| ||||||||| | ||||||||||||||| ||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27147753 |
ctctttgtttttataatgttgttttctttaagttcagccaatccaatcaagagaaagcaatacacaccatgcaaaaacatagtcctttattttcatgaca |
27147654 |
T |
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| Q |
337 |
taatttacaatggaatgaatgcagctaatgcaacatctgcaatagttgcagcaccacacggtgctaatttaactatattggcacctcaattccactttgg |
436 |
Q |
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| T |
27147653 |
taatttacaatggaatgaatgcagctaatgcaacatcttcaatagtag-agctccacaaggtgctaatttaacaaaattagcaacccaatttcactttgg |
27147555 |
T |
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| Q |
437 |
taacatagcagtttttgatgaccctatcacattgga |
472 |
Q |
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| T |
27147554 |
taacattgcagtttttgatgaccctatcacattgga |
27147519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 41674279 - 41674247
Alignment:
| Q |
9 |
gattattctcaatgcaatttaagtggactcact |
41 |
Q |
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| T |
41674279 |
gattatcctcaatgcaatttaagtggactcact |
41674247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 237 - 472
Target Start/End: Complemental strand, 554 - 320
Alignment:
| Q |
237 |
ctctttgtttttgtaatgttgtgtgctttaagttcagccattccaagcaaaagaaagtcatacacaccatgcaaaaacatggtcctttattttcatgaca |
336 |
Q |
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|||||||||||| ||||||||| | ||||||||||||||| ||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
554 |
ctctttgtttttataatgttgttttctttaagttcagccaatccaatcaagagaaagcaatacacaccatgcaaaaacatagtcctttattttcatgaca |
455 |
T |
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| Q |
337 |
taatttacaatggaatgaatgcagctaatgcaacatctgcaatagttgcagcaccacacggtgctaatttaactatattggcacctcaattccactttgg |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||| |||||||||||||| | ||| ||| | ||||| |||||||| |
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| T |
454 |
taatttacaatggaatgaatgcagctaatgcaacatcttcaatagtag-agctccacaaggtgctaatttaacaaaattagcaacccaatttcactttgg |
356 |
T |
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| Q |
437 |
taacatagcagtttttgatgaccctatcacattgga |
472 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
355 |
taacattgcagtttttgatgaccctatcacattgga |
320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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