View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20028_low_9 (Length: 488)

Name: NF20028_low_9
Description: NF20028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20028_low_9
NF20028_low_9
[»] chr8 (2 HSPs)
chr8 (18-388)||(43328220-43328588)
chr8 (431-483)||(43328631-43328683)
[»] chr1 (1 HSPs)
chr1 (54-100)||(26266067-26266113)
[»] chr3 (2 HSPs)
chr3 (55-100)||(28963960-28964005)
chr3 (68-97)||(25926907-25926936)
[»] scaffold0045 (2 HSPs)
scaffold0045 (65-100)||(65156-65191)
scaffold0045 (65-100)||(72488-72523)


Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 43328220 - 43328588
Alignment:
Q  18 atagagatagtataatttaaatgtgattgaacacaatttaaaatagtataatttaaaattgacaacaaaatttattaattcaataggaattcataaccca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43328220 atagagatagtataatttaaatgtgattgaacacaatttaaaatagtataatttaaaattgacaacaaaatttattaattcaataggaattcataaccca 43328319  T
Q  118 cttatagttaacatcgctatcggatcgcataccataatatcaatcctgcgaagaattactacaaaattattaaaaacaattcaatttcaaagtaaatatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  43328320 cttatagttaacatcgctatcggatcgcataccataatatcaatcctgcgaagaactactacaaaattattaaaaacaattcaatttcaaggtaaatatg 43328419  T
Q  218 tatgtagtacaggaagtaaaaagaagacgggacaataagatctgaagtataaattgacgtgggactacttatatgaaggttgttgttgaccatcatatta 317  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||    
T  43328420 tatgtagtacaggaagataaaagaagacgggacaataagatctgaagtataaattgacgtgagactacttatatgaaggtcgttattgactatcatatta 43328519  T
Q  318 gttccacaatcataaaacaactttgaatatagtatgaacgagtaacattgaaaccatgatatcataatcgc 388  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||    
T  43328520 gttccacaatcacaaaacaactttgaatatagtatgaatgagtaacgttgaaaccat--tatcataatcgc 43328588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 43328631 - 43328683
Alignment:
Q  431 tgatctccaaattcacgatgtgacacaaaatgttgttgattgcctttgctact 483  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  43328631 tgatctccaaattcacaatgtgacacaaaatgttgttgattgcctttggtact 43328683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 26266113 - 26266067
Alignment:
Q  54 tttaaaatagtataatttaaaattgacaacaaaatttattaattcaa 100  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||    
T  26266113 tttaaaatgatataatttaaaattgacagcaaaatttattaattcaa 26266067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 28963960 - 28964005
Alignment:
Q  55 ttaaaatagtataatttaaaattgacaacaaaatttattaattcaa 100  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||    
T  28963960 ttaaaatgatataatttaaaatggacaacaaaatttattaattcaa 28964005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 25926907 - 25926936
Alignment:
Q  68 atttaaaattgacaacaaaatttattaatt 97  Q
    ||||||||||||||||||||||||||||||    
T  25926907 atttaaaattgacaacaaaatttattaatt 25926936  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 65191 - 65156
Alignment:
Q  65 ataatttaaaattgacaacaaaatttattaattcaa 100  Q
    ||||||||||||||||||||||||||| ||||||||    
T  65191 ataatttaaaattgacaacaaaatttaataattcaa 65156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 72523 - 72488
Alignment:
Q  65 ataatttaaaattgacaacaaaatttattaattcaa 100  Q
    ||||||||||||||||||||||||||| ||||||||    
T  72523 ataatttaaaattgacaacaaaatttaataattcaa 72488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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