View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_12 (Length: 412)
Name: NF20029_high_12
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 23522280 - 23522496
Alignment:
| Q |
2 |
gtgggtagataatactattgagtttatagaaatggatgtgaatgaatggatccaaaaataagtgaaagggaggtggtactttgagaaggcaaaggcagtc |
101 |
Q |
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| T |
23522280 |
gtgggtatatactactatagagtttatagaaatggatgtgaatgaatggatccaaaaataagtgaaagggaggtggtactttgagaaggcaaaggcagtc |
23522379 |
T |
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| Q |
102 |
ttgtggcgattgtcaggcaattcactctgagatggatcagacccaattgtccatccatagatgtaatgtaagagtccccaccttttccttcccctctctg |
201 |
Q |
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| T |
23522380 |
ttgtggcgattgtcaggcaattcactctgagatggatcagacccaattgtccatccatagatgtaatgtaagagtccccaccttttccttcccctctctg |
23522479 |
T |
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| Q |
202 |
ttttataggtcccacca |
218 |
Q |
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| T |
23522480 |
ttttataggtcccacca |
23522496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 23522614 - 23522672
Alignment:
| Q |
336 |
tcattgaaagagaaactcatgacttaatgaatgttgagtcattctctcaacttcccttc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23522614 |
tcattgaaagagaaactcatgacttaatgaatgttgagtcattctctcaacttcccttc |
23522672 |
T |
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