View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20029_high_13 (Length: 393)
Name: NF20029_high_13
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 50399733 - 50399374
Alignment:
| Q |
18 |
gttggtatgaggaatttgtactatttgagaatgatgaatgcttggaatgccctcctactgcaagttgtgtacttgatttaattttataacttaaaacgac |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399733 |
gttggtatgaggaatt-gtactatttgagaatgataaatgcttggaatgccctcctactgcaagttgtgtacttgatttaattttataacttaaaacgac |
50399635 |
T |
|
| Q |
118 |
tatattattttcttataattttggtccccttttggttgtatccaaattttaatgtactcatgttaccaattaaaaatgaacagagtcattgttccaatct |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399634 |
tatat-attttcttataattttggtccccttttggttgtatccaaattttaatgtactcatgttaccaattaaaaatgaacagagtcattgttccaatct |
50399536 |
T |
|
| Q |
218 |
caataaggcacaacttcgaagtggaaatattggagtatatttcgattccataaatagatgtctttgttttatttgcacaaccaatacattacaattacat |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399535 |
caataaggcacaacttcggagtggaaatattggagtatatttcgattccatagatagatgtctttgttttatttgcacaaccaatacattacaattacat |
50399436 |
T |
|
| Q |
318 |
gggttctttcaaacatgtttggagcacagcctcaaacaatctcaaacaaatatgtcatgttc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50399435 |
gggttctttcaaacatgtttggagcacagcctcaaacaatcttaaacaaatatgtcatgttc |
50399374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 50386981 - 50386867
Alignment:
| Q |
144 |
cccttttggttgtatccaaattttaatgtactcatgttaccaattaaaa-------atgaacagagtcattgttccaatctcaataaggcacaacttcga |
236 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||| || ||||||| ||||||||| |||| |||| || || |||||| || ||||||| |
|
|
| T |
50386981 |
cccttttggttgaatccaaattttaatctaatcatgttgcctattaaaatttaaaaatgaacagattcatcgttctaacctaaataagtcataacttcgg |
50386882 |
T |
|
| Q |
237 |
agtggaaatattgga |
251 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
50386881 |
agttgaaatattgga |
50386867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University