View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_17 (Length: 359)
Name: NF20029_high_17
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 50394619 - 50394967
Alignment:
| Q |
1 |
ggtggaggtaaagaacgtgggtaagacagaagaagatgacaaaattggtcaacggcagcatgtggtgacaacttagtttttaagacaagttgataaggat |
100 |
Q |
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| T |
50394619 |
ggtggaggtaaagaacgtgggtaagacagaagaagatgacaaaattggtcaacggcagcatgtggtgacaacttagtttttaagacaagtggataaggat |
50394718 |
T |
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| Q |
101 |
gatattaattattatagatcatagattcataattaagtgtaaacatgaaatttaaaatgctgtcatacatattatacagtataatatgtaacattatgtg |
200 |
Q |
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| T |
50394719 |
gatattaattat-atagatcatagattcataattaagtgtaaacatgaaatttaaaatgttgtcatacatattatacagtataatatgtaacattatgtg |
50394817 |
T |
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| Q |
201 |
tgctaatttttctttcccgtgatgtataattttcattttcttatttgattccattgttatactatagtttaatgcagatctgttcctttacttacatttc |
300 |
Q |
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| T |
50394818 |
tgctaatttttctttcccgtgatgtataattttcatttttttatttgattgcattgttatactatagtttaatgcagatctgttcctttacttacatgac |
50394917 |
T |
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| Q |
301 |
atgcacgtcgttggtcaatgccaagttcaagtctttattttaatttataa |
350 |
Q |
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| T |
50394918 |
atgcacatcgttggtcaatgccaagttcaagtctttgttttaatttataa |
50394967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 50386200 - 50386428
Alignment:
| Q |
1 |
ggtggaggtaaagaacgtgggtaagacagaagaagatgacaaaattggtcaacggcagcatgtggtgacaacttagtttttaagacaagttgataaggat |
100 |
Q |
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| T |
50386200 |
ggtggaggtaaagaacgtagaaaagacagaggaagatgacaaagttggtcaacagcagcatgttgcgacaacttggaatt-aggacaaatggttaaggac |
50386298 |
T |
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| Q |
101 |
gatattaattattatagatcatagattcataattaagtgtaaacatgaaatttaaaatgctgtcatacatattatacagtataatatgtaacattatgtg |
200 |
Q |
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| T |
50386299 |
gatatta-------tagatcatagat-cata--taagtgtaaacatgaaatttaaaat-ttgtcatacatattataaagtataat-tgtagctttatgtg |
50386386 |
T |
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| Q |
201 |
tgctaatttttctttcccgtgatgtataattttcattttctt |
242 |
Q |
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| T |
50386387 |
tgtttgtttttctttgtagtgatgtatacttgtcattttctt |
50386428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50391345 - 50391392
Alignment:
| Q |
1 |
ggtggaggtaaagaacgtgggtaagacagaagaagatgacaaaattgg |
48 |
Q |
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| T |
50391345 |
ggtggaggtaaagaacgtgggaaagacagaagaaggtgacaaagttgg |
50391392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 50386720 - 50386756
Alignment:
| Q |
261 |
actatagtttaatgcagatctgttcctttacttacat |
297 |
Q |
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| T |
50386720 |
actatagtttaatgcagatttgctcctttacttacat |
50386756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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