View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_18 (Length: 356)
Name: NF20029_high_18
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_18 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 36 - 356
Target Start/End: Original strand, 38610221 - 38610541
Alignment:
| Q |
36 |
tcttgtttaaaatgtaatgaaatcttctacacctgcaagagttnnnnnnnttcagcacaaaaaatgtggcaatagatgtgaaataacctggattgatact |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38610221 |
tcttgtttaaaatgtaatgaaatcttctacacctgcaatagttaaaaaaattcagcacaaaaaatgtggcaatagatgtgaaataacctggattgatact |
38610320 |
T |
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| Q |
136 |
cttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtacttgttgtgcatgttttgccaggctaaatttgtagc |
235 |
Q |
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| T |
38610321 |
cttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtacttgttgtgcatgttttgccaggctaaatatgtagc |
38610420 |
T |
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| Q |
236 |
agtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaagacagaagagaatagtaaaatttgcatcatcgcga |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38610421 |
agtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaagacagaagagaatagtaaaatttgcatcatcgcga |
38610520 |
T |
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| Q |
336 |
aatgaatgacttgcaattaac |
356 |
Q |
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||||||||||||||||||||| |
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| T |
38610521 |
aatgaatgacttgcaattaac |
38610541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 36 - 356
Target Start/End: Original strand, 38795005 - 38795326
Alignment:
| Q |
36 |
tcttgtttaaaatgtaatgaaatcttctacacctgcaagagttnnnnnnn-ttcagcacaaaaaatgtggcaatagatgtgaaataacctggattgatac |
134 |
Q |
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| T |
38795005 |
tcttgtttaaaatgtaatgaaatcttctacacctgcaatagttaaaaaaaattcagcacaaaaaatgtggcaatagatgtgaaataacctggattgatac |
38795104 |
T |
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| Q |
135 |
tcttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtacttgttgtgcatgttttgccaggctaaatttgtag |
234 |
Q |
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| T |
38795105 |
tcttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtacttgttgtgcatgttttgccaggctaaatatgtag |
38795204 |
T |
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| Q |
235 |
cagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaagacagaagagaatagtaaaatttgcatcatcgcg |
334 |
Q |
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| T |
38795205 |
cagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaagacagaagagaatagtaaaatttgcataatcgcg |
38795304 |
T |
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| Q |
335 |
aaatgaatgacttgcaattaac |
356 |
Q |
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|||||||||||||||||||||| |
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| T |
38795305 |
aaatgaatgacttgcaattaac |
38795326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 202 - 356
Target Start/End: Original strand, 34725795 - 34725949
Alignment:
| Q |
202 |
tgttgtgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
34725795 |
tgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagtaaatggactcatctgttgcttcccatctgcagaaccaaaatatattagaag |
34725894 |
T |
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| Q |
302 |
acagaagagaatagtaaaatttgcatcatcgcgaaatgaatgacttgcaattaac |
356 |
Q |
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| T |
34725895 |
atagaagacaacagtaaaatttgaatcattgtgaaatgaatgacttgcaattaac |
34725949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 202 - 356
Target Start/End: Original strand, 34729853 - 34730007
Alignment:
| Q |
202 |
tgttgtgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaag |
301 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
34729853 |
tgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaag |
34729952 |
T |
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| Q |
302 |
acagaagagaatagtaaaatttgcatcatcgcgaaatgaatgacttgcaattaac |
356 |
Q |
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| T |
34729953 |
ttataagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaac |
34730007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 34729702 - 34729789
Alignment:
| Q |
113 |
gtgaaataacctggattgatactcttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtac |
200 |
Q |
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| T |
34729702 |
gtgaaataacctcgatcgatactcttggttgcaagaactttggatgtaaaatggacaatggaatcatcagaaaacatagtgacagtac |
34729789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 210 - 344
Target Start/End: Original strand, 34720563 - 34720697
Alignment:
| Q |
210 |
atgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaagacagaaga |
309 |
Q |
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||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| || |||||||||||| | ||| |
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| T |
34720563 |
atgttttgcaaggctaaatttatagcagtctttgaataggcaaatggattcatctgttgcttcccatctgcagaactaaactatattagaagataagaga |
34720662 |
T |
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| Q |
310 |
gaatagtaaaatttgcatcatcgcgaaatgaatga |
344 |
Q |
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| T |
34720663 |
gagcggtaaaatgtgcatgattgtgaaatgaatga |
34720697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 34720404 - 34720500
Alignment:
| Q |
113 |
gtgaaataacctggattgatactcttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtacttgttgtgc |
209 |
Q |
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||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||| | ||||| |||| |||||||||||| ||||| ||||| |
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| T |
34720404 |
gtgaaatgacctgcattgatactcttggtttcaaggactttagatgtaaaatggacatcggaatcatcagatagcatagtgacaaaacttggtgtgc |
34720500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 34725651 - 34725739
Alignment:
| Q |
120 |
aacctggattgatactcttggttgcaaggactttggatgtaaaatggacattgaaatcaacagaaagcatagtgacagtacttgttgtg |
208 |
Q |
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| T |
34725651 |
aacctggattaacactcttggttgcaaggattttggatgtaaaatggaaattggagtcatgagaaagcatagtgacagtacttggtgtg |
34725739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 23481164 - 23481245
Alignment:
| Q |
261 |
atctgttgctttccatctgcagaaccgaaatatattagaagacagaagagaatagtaaaatttgcatcatcgcgaaatgaat |
342 |
Q |
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||||||||||| |||||||||||| ||||||||||||||| ||| |||||| ||||||||||||| ||| ||||||||| |
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| T |
23481164 |
atctgttgcttctcatctgcagaactaaaatatattagaagatagatgagaatgataaaatttgcatcgtcgtgaaatgaat |
23481245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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