View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20029_high_21 (Length: 325)

Name: NF20029_high_21
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20029_high_21
NF20029_high_21
[»] chr3 (11 HSPs)
chr3 (56-258)||(17943778-17943980)
chr3 (64-129)||(19415991-19416056)
chr3 (161-227)||(19466264-19466330)
chr3 (158-227)||(18148709-18148778)
chr3 (158-258)||(18117622-18117722)
chr3 (158-258)||(18105395-18105494)
chr3 (178-258)||(19463086-19463166)
chr3 (156-203)||(17725508-17725555)
chr3 (156-203)||(19026737-19026784)
chr3 (34-104)||(19382783-19382853)
chr3 (158-214)||(18871940-18871996)
[»] chr6 (1 HSPs)
chr6 (84-152)||(13664864-13664933)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 56 - 258
Target Start/End: Original strand, 17943778 - 17943980
Alignment:
Q  56 actgttattggggcttgtcctcacatcatgtatctccctccttaattttggacagtgtttcttatgttacgtatctctcttatttttattagtttatgta 155  Q
    |||||| |||||| |||||||||  ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  17943778 actgttcttggggattgtcctcatctcatgtatctccctctttaattttggacagtgttgcttatgttatgtatctctcttctttttattagtttatgta 17943877  T
Q  156 tcagtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcat 255  Q
    ||| |||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17943878 tcactttatgcagatagttgcagaataagagtttgtgtgcaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcat 17943977  T
Q  256 tac 258  Q
    |||    
T  17943978 tac 17943980  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 19415991 - 19416056
Alignment:
Q  64 tggggcttgtcctcacatcatgtatctccctccttaattttggacagtgtttcttatgttacgtat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19415991 tggggcttgtcctcacatcatgtatctccctccttaattttggacagtgtttcttatgttacgtat 19416056  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 19466264 - 19466330
Alignment:
Q  161 ttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagc 227  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  19466264 ttatgcagatagttgcagaataagagtttgtgtagaaactttgctgcttttaattttacattatagc 19466330  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 18148709 - 18148778
Alignment:
Q  158 agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagc 227  Q
    |||||||||||||| ||||||||||||||||||||| |||| |||| |||||| ||||| ||||||||||    
T  18148709 agtttatgcagatagttgcagaataagagtttgtgtagaaattttgctgcttttaatttcacattatagc 18148778  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 18117622 - 18117722
Alignment:
Q  158 agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcatta 257  Q
    ||||||||| |||| |||||||||||||  |||||  ||||||||| |||||  |||||||||||||||||| || |||||| | ||||||||| |||||    
T  18117622 agtttatgcggatagttgcagaataagaaattgtgcagaaactttgttgcttataattttacattatagctaaatcccatatgaaatttgattttcatta 18117721  T
Q  258 c 258  Q
    |    
T  18117722 c 18117722  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 18105395 - 18105494
Alignment:
Q  158 agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcatta 257  Q
    ||||||||| |||| ||||| |||||||  |||||| ||||||||  |||||  |||||||||||||||||| || |||||| | |||| |||| |||||    
T  18105395 agtttatgcggatagttgcaaaataagaaattgtgtagaaactttc-tgcttataattttacattatagctaaatcccatatgaaattttattttcatta 18105493  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 19463086 - 19463166
Alignment:
Q  178 gaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcattac 258  Q
    ||||||||  |||||| ||||||||| |||||  |||||||||||||| ||| || |||||| | ||||||||| ||||||    
T  19463086 gaataagaaattgtgtagaaactttgatgcttataattttacattatatctaaatcccatatgaaatttgattttcattac 19463166  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 17725555 - 17725508
Alignment:
Q  156 tcagtttatgcagataattgcagaataagagtttgtgttgaaactttg 203  Q
    |||||||||||||||  ||| ||||||||||||||||| |||||||||    
T  17725555 tcagtttatgcagatggttgtagaataagagtttgtgtagaaactttg 17725508  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 19026784 - 19026737
Alignment:
Q  156 tcagtttatgcagataattgcagaataagagtttgtgttgaaactttg 203  Q
    |||||||||||||||  ||| ||||||||||||||||| |||||||||    
T  19026784 tcagtttatgcagatggttgtagaataagagtttgtgtagaaactttg 19026737  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 19382783 - 19382853
Alignment:
Q  34 aatggttgcattcattttgtcaactgttattggggcttgtcctcacatcatgtatctccctccttaatttt 104  Q
    ||||||| |||||||||||| |  |||| || ||||||| || ||| ||||||||||| ||||||||||||    
T  19382783 aatggttacattcattttgtaagttgttctttgggcttggccacacctcatgtatctctctccttaatttt 19382853  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 18871996 - 18871940
Alignment:
Q  158 agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaat 214  Q
    |||||||||||||  ||  ||||||||||||||||| ||||||||| ||||| ||||    
T  18871996 agtttatgcagatggtttaagaataagagtttgtgtagaaactttgctgcttccaat 18871940  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 13664933 - 13664864
Alignment:
Q  84 tgtatctccctccttaattttggacagtgttt-cttatgttacgtatctctcttatttttattagtttat 152  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||| ||||||||| |||||    
T  13664933 tgtatctccctccttaatattggacagtgtttgcttatgttatgtatccctcttttttttattaatttat 13664864  T

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