View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_22 (Length: 323)
Name: NF20029_high_22
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 12563087 - 12562816
Alignment:
| Q |
18 |
atgaatttagaaagtacaaaataaacaggttatatatctcagcatgagaagccaggattttctttctaattattcagataggagcatgtcaaacaaacac |
117 |
Q |
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| T |
12563087 |
atgaatttagaaagtacaaaataaacaggttatatgtctcagcatgagaagccaggattttctttctaattattcagataggagcatgtcaaacaaacac |
12562988 |
T |
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| Q |
118 |
aaaattggtaagagaccacactaaatggaaaagaaattgataccaataataatttgtgtgagtgttgtgtgctatgaagcactgacacacgaacactact |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12562987 |
aaaattggtaagagaccacactctatggaaaagaaattgataccaataataatttgtgtgagtgttgtgtgctatgaagcactgacacacgaacactact |
12562888 |
T |
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| Q |
218 |
agacatgtcgctgacacattgataccaataataatcagttaaaatggaataatcgaatgtaatcacaatcga |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12562887 |
agacatgtcgctgacacattgataccaataataatcagttaaaatggaataatcgaatgtaatcacaatcga |
12562816 |
T |
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