View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_24 (Length: 315)
Name: NF20029_high_24
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_24 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 12736615 - 12736906
Alignment:
| Q |
23 |
aacaatcatgatcactaatgggatcgccaacttgtgctacaacaatatttgatctttttgttgctttgaggaaataatcagttccccaacgaattgcttc |
122 |
Q |
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| T |
12736615 |
aacaatcatggtcactaatgggatcgccaacttgtgctacaacaatatttggtctttttgttgctttgaggaaataatcagttccccaacgaattgcttc |
12736714 |
T |
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| Q |
123 |
caatgcatgttgcaaatccggatccatgagttctccaaattccaccacactccaagccagcatggtggttgtatatgccattgggaaattgaattttaca |
222 |
Q |
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| T |
12736715 |
caatgcatgttgcaaatccggacccatgagttctccaaattccaccacactccaagccagcatggtggttgtatatgccattgggaaattgaattttaca |
12736814 |
T |
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| Q |
223 |
ttgtcaccagcgtcatagtaaccaccaaccatgttcatctgggtttggaatacaagtcaagattagcaaaatcaaatatttgattaacatatt |
315 |
Q |
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| T |
12736815 |
ttgtcaccagcatcatagtaaccaccaaccatgttcatctgggtttggaatacaagtcaagattagc-aaatcaaatatttgactaacatatt |
12736906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 12765906 - 12766157
Alignment:
| Q |
23 |
aacaatcatgatcactaatgggatcgccaacttgtgctacaacaatatttgatctttttgttgctttgaggaaataatcagttccccaacgaattgcttc |
122 |
Q |
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|||||||||| |||||||| || | |||||||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||| |||| ||| |
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| T |
12765906 |
aacaatcatggtcactaatagggttgccaacttgtgcaacaacaatatttggctttgttgtggctttgaggaaataatcagttccccaacggattgattc |
12766005 |
T |
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| Q |
123 |
caatgcatgttgcaaatccggatccatgagttctccaaattccaccacactccaagccagcatggtggttgtatatgccattgggaaattgaattttaca |
222 |
Q |
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| T |
12766006 |
taatgcatgttgcaaatccggacccatgagttctccaaattccaccacactccaagccagcatggtggttgtatatgccatagggaaattgaattttaca |
12766105 |
T |
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| Q |
223 |
ttgtcaccagcgtcatagtaaccaccaaccatgttcatctgggtttggaata |
274 |
Q |
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|||||||| || ||||||||||||||||||| | |||||| |||||||||| |
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| T |
12766106 |
ttgtcaccggcatcatagtaaccaccaaccaaatccatctgtgtttggaata |
12766157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 12797102 - 12797158
Alignment:
| Q |
197 |
atgccattgggaaattgaattttacattgtcaccagcgtcatagtaaccaccaacca |
253 |
Q |
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| T |
12797102 |
atgccattggaaaattgaatttcacattgtcaccagcatcatagtaaccaccaacca |
12797158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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