View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_27 (Length: 302)
Name: NF20029_high_27
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 13590714 - 13590880
Alignment:
| Q |
1 |
tatgatgttaatgatgaggttgttttgttgcggattattaagtttaattgttgtaattttctgaaattgttgatcttttgagatgattcgattcagttat |
100 |
Q |
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| T |
13590714 |
tatgatgttaatgatgaggttgttttgttgcggattattaagtttaattgttgtaattttctgaaattgttgatcttttgagatgattcgattcagttat |
13590813 |
T |
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| Q |
101 |
t---tgtcttcaataa----tcctatgtaacaatgaatggaataaataaattttatgtggttcatca |
160 |
Q |
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| T |
13590814 |
tatttgtcttcaattaatagtcctatgtaacaatgaatggaataaataaattttatgtggttcatca |
13590880 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 13590944 - 13591006
Alignment:
| Q |
224 |
cctaagttgagtacaagatttggacaaaatataataaaatagaggaatatcacatgttcggtt |
286 |
Q |
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| T |
13590944 |
cctaagttgaatacaagatttggacaaaatataataaaatagaggaatatcacatgttcggtt |
13591006 |
T |
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