View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_29 (Length: 298)
Name: NF20029_high_29
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 35708078 - 35707808
Alignment:
| Q |
18 |
atttcaaggatgccacttgcattaatgagcacttcacgcgcaactttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggat |
117 |
Q |
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| T |
35708078 |
atttcaaggatgccacttgcattaatgagcacttcacgcgcaactttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggat |
35707979 |
T |
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| Q |
118 |
gcatggaactgagttgtctgtgtgttgcaattataataggttcgacaacacaatgagttcttagcctgcaaacagaattaacatattactaagttagtac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35707978 |
gcatggaactgagttgtctgtgtgttgcaattataataggttcgacaacacaatgagttcttagcctgcaaacagaattaacatattactaagttagtac |
35707879 |
T |
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| Q |
218 |
tagttataagcttgacataacatctcatacaacctaattggtactcaccaatggcttataagttgatgatg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35707878 |
tagttataagcttgacataacatctcatacaacctaattggtactcaccaatggcttataagttgatgatg |
35707808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 35724038 - 35723768
Alignment:
| Q |
18 |
atttcaaggatgccacttgcattaatgagcacttcacgcgcaactttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggat |
117 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35724038 |
atttcaaggagcccacttgcattaatgagtacttcacgcgcaactttattgatttccatggtatatctcagatgtggatgcaataatctaaatattggat |
35723939 |
T |
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| Q |
118 |
gcatggaactgagttgtctgtgtgttgcaattataataggttcgacaacacaatgagttcttagcctgcaaacagaattaacatattactaagttagtac |
217 |
Q |
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| T |
35723938 |
gtatggaactgagttgtctgtgtgttgcaattataataggttcgacaacacaatgagttcttagcctgcaaacagaattaacatattactaagttagtac |
35723839 |
T |
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| Q |
218 |
tagttataagcttgacataacatctcatacaacctaattggtactcaccaatggcttataagttgatgatg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35723838 |
tagttataagcttgacataacatctcatacaacctaattggtactcaccaatggcttataagttcatgatg |
35723768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 22512703 - 22512825
Alignment:
| Q |
61 |
ctttattgatttccatggtatatctcagatgtggatgcaataatctaaaaattggatgcatggaactgagttgtctgtgtgttgcaattataataggttc |
160 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
22512703 |
ctttattgatctccatggtatacctcagatgtggatgcaataatctaaaaattagatgcatggaactgagttgtctatgcatggcaattataataggttc |
22512802 |
T |
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| Q |
161 |
gacaacacaatgagttcttagcc |
183 |
Q |
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|||||||||||||||| |||||| |
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| T |
22512803 |
gacaacacaatgagtttttagcc |
22512825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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