View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_3 (Length: 525)
Name: NF20029_high_3
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 51 - 525
Target Start/End: Complemental strand, 12737404 - 12736882
Alignment:
| Q |
51 |
gtaaaatcagtttcact---taactatagtgatgcattgacaaaaagcatcttattttttgaaggtcaaaggtctggtaaattgccatcttctcaacgta |
147 |
Q |
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| T |
12737404 |
gtaaaatcactttcactaattaactatggtgatgcattaacaaaaagcatcttattttttgaaggtcaaaggtctggcaaattgccaccttctcaacgta |
12737305 |
T |
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| Q |
148 |
tgacatggagaaaagattctgcccttcatgatggatctgatatacttgtaagtatattctctatannnnnnnnnnnngtggtaacctagcggttctcaag |
247 |
Q |
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| T |
12737304 |
tgacatggagaaaagactctgcccttcatgatggatgtgatattcttgtaagtaaattctctatcatttttatttttgtggtaacccagcggttttcaaa |
12737205 |
T |
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| Q |
248 |
gaaaagggttctgataatcggt---cgt----------------gtttttagtagaacttctctattttttatgccaaatgttaatgttgctttacttac |
328 |
Q |
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|||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| || |||| |||||| ||||||| |
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| T |
12737204 |
gaaaagggttctgataatcggtgtaagtaaagtctgactaaaaagtttttagtggaacttctctattttttatgccagatattaacgttgctctacttac |
12737105 |
T |
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| Q |
329 |
cttcgattg--------------aactctggtttatcgaat------------tttcacatcaaaatatagtactaattatgtatatctttcactctatt |
402 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
12737104 |
cttcgattgaactccggattatcaactctggtttatcgaattctcacagtaattttcacatcaaaatatagtattaataatgtatatctttcactctatt |
12737005 |
T |
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| Q |
403 |
tgattatgcattaaaatattaaggagttatttatctgaaccgttatatataaattttgatggttcacgctttaattctctatatttattccttgatttaa |
502 |
Q |
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| T |
12737004 |
tgattatgcattaaaattttaaggagttattgatctgaaccgttatatataaattttgatggttcacggtttaattctctatatttattccttgatttaa |
12736905 |
T |
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| Q |
503 |
tatgttaatcaaatatttgattt |
525 |
Q |
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| T |
12736904 |
tatgttagtcaaatatttgattt |
12736882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 12767417 - 12767257
Alignment:
| Q |
51 |
gtaaaatcagtttcacttaactatagtgatgcattgacaaaaagcatcttattttttgaaggtcaaaggtctggtaaattgccatcttctcaacgtatga |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12767417 |
gtaaaatcagtttcacttaactatagtgatgcattgacaaaaagcatcttattttttgaaggtcaaaggtctggtaaattgccatcttctcaacgtatga |
12767318 |
T |
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| Q |
151 |
catggagaaaagattctgcccttcatgatggatctgatatacttgtaagtatattctctat |
211 |
Q |
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| T |
12767317 |
catggagaaaagactctgcccttcatgatggatgtgatattcatgtaagtatattctctat |
12767257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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