View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20029_high_31 (Length: 269)
Name: NF20029_high_31
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20029_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 39461977 - 39461820
Alignment:
| Q |
20 |
aaacagaaggaagaaactcatattgtctcaaaagctcattctaatccctttgctgatctagcatccaacctacactcccccactaaattttcatgttcta |
119 |
Q |
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| T |
39461977 |
aaacagaaggaagaaactcatattgtctcaaaagctcattctaatccctttgctgatctagcatccaacctacactcccccactaaaatttcatgttcta |
39461878 |
T |
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| Q |
120 |
atgttcctatgaatgctaggaagccattatccaattttggttcaaattcaatttctaa |
177 |
Q |
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| T |
39461877 |
atgttcctatgaatgctaggaagccattatccaattttggttcaaattcaatttctaa |
39461820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 39461485 - 39461403
Alignment:
| Q |
176 |
aatctttttcattccttcaacatgttagagcactcaccatttaaaataaaaaagtttcggattttgggttccatgtaattcat |
258 |
Q |
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| T |
39461485 |
aatctttttcattccttcaacatgttagagcactcaccatttcaaataaaaaagtttcggattttgggttccatgtaattcat |
39461403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 39700396 - 39700531
Alignment:
| Q |
40 |
tattgtctcaaaagctcattctaatccctttgctgatctagcatccaacctacactcccccactaaattttcatgttctaatgttcctatgaatgctagg |
139 |
Q |
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||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||| | |||||||||||||| || |
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| T |
39700396 |
tattggctcaaaggatcattttaatccctttgctgatctagcatccaacctacactaccccactacaaggccatgttctgaggttcctatgaatgccaga |
39700495 |
T |
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| Q |
140 |
aagccattatccaattttggttcaaattcaatttct |
175 |
Q |
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| T |
39700496 |
aaaccgctatccaattttggttcaaattcaacttct |
39700531 |
T |
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