View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20029_high_33 (Length: 268)

Name: NF20029_high_33
Description: NF20029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20029_high_33
NF20029_high_33
[»] chr4 (7 HSPs)
chr4 (19-260)||(38929500-38929743)
chr4 (40-258)||(21988093-21988311)
chr4 (20-253)||(28966544-28966776)
chr4 (19-213)||(12295831-12296024)
chr4 (19-127)||(16501399-16501508)
chr4 (32-126)||(24740425-24740518)
chr4 (72-122)||(46699094-46699144)
[»] chr5 (7 HSPs)
chr5 (19-260)||(22675485-22675725)
chr5 (32-260)||(27712757-27712985)
chr5 (19-200)||(24072511-24072690)
chr5 (39-145)||(8730605-8730711)
chr5 (214-260)||(8730780-8730826)
chr5 (53-148)||(26046262-26046359)
chr5 (49-126)||(23426118-23426195)
[»] chr1 (5 HSPs)
chr1 (29-260)||(19598321-19598552)
chr1 (19-213)||(50589437-50589630)
chr1 (32-213)||(38544969-38545148)
chr1 (40-258)||(17033263-17033493)
chr1 (147-213)||(4651573-4651638)
[»] chr2 (10 HSPs)
chr2 (19-260)||(15126575-15126815)
chr2 (19-200)||(2062569-2062749)
chr2 (18-213)||(22885364-22885558)
chr2 (49-213)||(16959716-16959876)
chr2 (39-145)||(25505196-25505302)
chr2 (54-116)||(29486831-29486893)
chr2 (212-260)||(4471785-4471833)
chr2 (222-260)||(22885304-22885342)
chr2 (214-260)||(25505081-25505127)
chr2 (152-200)||(25505154-25505201)
[»] scaffold0499 (1 HSPs)
scaffold0499 (19-260)||(6238-6475)
[»] chr6 (8 HSPs)
chr6 (19-260)||(13098735-13098972)
chr6 (49-198)||(12793802-12793949)
chr6 (19-127)||(26535020-26535128)
chr6 (32-105)||(15943696-15943769)
chr6 (19-121)||(9223697-9223798)
chr6 (147-200)||(26216151-26216202)
chr6 (214-252)||(9223905-9223943)
chr6 (214-252)||(21264852-21264890)
[»] scaffold1613 (1 HSPs)
scaffold1613 (32-213)||(1248-1427)
[»] chr7 (6 HSPs)
chr7 (178-258)||(47457189-47457269)
chr7 (19-210)||(9106821-9107009)
chr7 (19-127)||(12480557-12480665)
chr7 (39-127)||(46133575-46133663)
chr7 (52-138)||(29647556-29647642)
chr7 (147-213)||(38485342-38485407)
[»] chr3 (4 HSPs)
chr3 (38-181)||(1653149-1653291)
chr3 (160-253)||(47945521-47945614)
chr3 (78-188)||(30935647-30935756)
chr3 (71-212)||(25594752-25594883)
[»] chr8 (4 HSPs)
chr8 (38-200)||(30236342-30236502)
chr8 (147-213)||(10552053-10552119)
chr8 (51-116)||(17657337-17657402)
chr8 (215-260)||(17720876-17720921)
[»] scaffold0062 (1 HSPs)
scaffold0062 (71-138)||(46798-46865)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 38929500 - 38929743
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38929500 aggaggtggatgcttttatggtggttgttgtgggtgattccttttggagactgcctatgttattcgggtccatattcgttgtcgctacttcttgtttggg 38929599  T
Q  119 ttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattg--atgtatgaaccaccgcagtc 216  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||    
T  38929600 ttttgggtggccatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatatgtatgaaccaccgcaatc 38929699  T
Q  217 ttactttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    |||||||||||||| |||||||||||||||||||||| ||||||    
T  38929700 ttactttttgtgtgctggattctggtgggccggttacttttgct 38929743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 21988311 - 21988093
Alignment:
Q  40 tggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgtta 139  Q
    |||||| | ||||||||||||||||||||  | || |||||||| |||||||||||||||||||||| ||||||||| ||||||||| | ||  |||||     
T  21988311 tggttgaggtgggtgattccttttggagatcgtctatgttattcaggtccatattcgttgtcgctacctcttgtttgagttttgggtcgctaaagtgttt 21988212  T
Q  140 agggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgcagtcttactttttgtgtgttggattct 239  Q
    ||  ||| |||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  21988211 agattgtctttgagggtgcgtatcctttgagctgagcattttgttcctttttgattgatgtatgaaccaccgcagtcttactttttgtgtgctgaattct 21988112  T
Q  240 ggtgggccggttacctttg 258  Q
    |||||||||||||| ||||    
T  21988111 ggtgggccggttacttttg 21988093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 28966544 - 28966776
Alignment:
Q  20 ggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggt 119  Q
    |||||||  ||||||||||| ||||||  ||||||||||||||||||||| |||||| |||||| | ||||| ||||||||| |||| ||   |||| ||    
T  28966544 ggaggtgtgtgcttttgtggcggttgttgtgggtgattccttttggagaccgcctctcttattcagatccattttcgttgtcactacctccgttttgagt 28966643  T
Q  120 tttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgcagtctta 219  Q
    ||||||||| |  |||||| ||||||||||||||||||||||||||| |||| ||||  |||||||||| ||||||||||| || |||||||||||||||    
T  28966644 tttgggtggctgaggtgtttagggtgtttttgagggtgtgtgtccttcgagccgagc-atttgttcctttttgattgatgtttgcaccaccgcagtctta 28966742  T
Q  220 ctttttgtgtgttggattctggtgggccggttac 253  Q
    ||||| ||||| ||||||||||||||||||||||    
T  28966743 cttttagtgtgctggattctggtgggccggttac 28966776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 12295831 - 12296024
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattcctttt-ggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgg 117  Q
    ||||||||| || |||||||| ||||||  ||||||||||||||| ||||  ||||||| ||||| |||| |||||||||||||||||| |||||||||     
T  12295831 aggaggtgggtgtttttgtggcggttgttgtgggtgattcctttttggaggatgcctctattattggggttcatattcgttgtcgctacctcttgtttga 12295930  T
Q  118 gttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
    ||||||||  | || | |||| | |||| ||||||||||  |||||||| ||||||||| |||| |||||| ||||| ||||| || |||||||||    
T  12295931 gttttgggctgctaagttgtttaaggtg-ttttgagggtacgtgtccttcgagctgagcatttt-ttcctttttgatcgatgtttgcaccaccgca 12296024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 16501399 - 16501508
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattcctt-ttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgg 117  Q
    ||||||||| || |||||||||||||||  |||||||||||||  ||||| | |||| |||| ||||||||||||  ||||||||||   |||||||||     
T  16501399 aggaggtgggtgtttttgtggtggttgttgtgggtgattccttggtggaggccgcctttgtttttcgggtccatacccgttgtcgcttactcttgtttgt 16501498  T
Q  118 gttttgggtg 127  Q
    | ||||||||    
T  16501499 gctttgggtg 16501508  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 24740518 - 24740425
Alignment:
Q  32 ttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggt 126  Q
    ||||||||||||||| |||| |||||||||  || | | || | || |||||||||||||||||||||||  ||| ||||||||| |||||||||    
T  24740518 ttttgtggtggttgttttggttgattccttgcggtggccgcatttgctattcgggtccatattcgttgtccttac-tcttgtttgtgttttgggt 24740425  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 46699144 - 46699094
Alignment:
Q  72 cctctgttattcgggtccatattcgttgtcgctacttcttgtttgggtttt 122  Q
    |||||||||||| |||||||||| ||||||||||  ||||||||| |||||    
T  46699144 cctctgttattcaggtccatatttgttgtcgctatctcttgtttgagtttt 46699094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 22675725 - 22675485
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    ||||||||| ||||||||||| ||||||  ||||||| |||||||||| ||  |||||||||||||||||| |||||||||||||||| |||| |||| |    
T  22675725 aggaggtgggtgcttttgtggcggttgttgtgggtgactccttttggaaaccacctctgttattcgggtccttattcgttgtcgctacctcttctttgag 22675626  T
Q  119 ttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgcagtctt 218  Q
    ||||||||||  | |||||| ||||||||||||||| || |||||||||||| |||||  | |||| ||| || |||||||| ||||||||| || ||||    
T  22675625 ttttgggtggccaaggtgtttagggtgtttttgaggatgcgtgtcctttgagttgagc-atctgtttcttttttattgatgtttgaaccaccacaatctt 22675527  T
Q  219 actttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  22675526 actttttgtgtgttggattctggtgggccggttacttttgct 22675485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 260
Target Start/End: Original strand, 27712757 - 27712985
Alignment:
Q  32 ttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgttt-gggttttgggtggtt 130  Q
    |||||||| ||||||  |||||||||||| |||||||| |||||| ||||||||||  ||||||||||||||||| ||||||||  | |||||||||| |    
T  27712757 ttttgtggcggttgttgtgggtgattcctcttggagaccgcctctattattcgggtttatattcgttgtcgctacctcttgtttcagtttttgggtggct 27712856  T
Q  131 atggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgcagtcttactttttgtgtg 230  Q
    | |||||| |||||| ||||||||  | | ||||||  ||||| ||  |||||||||| ||||||||| | || ||||| ||||||||||||||||||||    
T  27712857 aaggtgtttagggtgattttgaggaggcgcgtccttcaagctgggc-atttgttcctttttgattgatatttgcaccactgcagtcttactttttgtgtg 27712955  T
Q  231 ttggattctggtgggccggttacctttgct 260  Q
     ||||||||| |||||||||||| ||||||    
T  27712956 ctggattctgatgggccggttacttttgct 27712985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 24072690 - 24072511
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    ||||||| | || |||||||||||||||  ||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||  ||||||||  |    
T  24072690 aggaggttggtgtttttgtggtggttgttgtgggtgatttcttttagaggccgcctctgttattcgggtccatattcgttgtcgctagctcttgtttaag 24072591  T
Q  119 ttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgt 200  Q
    |||||||| |||| |||||| ||||||  ||| |||||| |||||||| ||| ||||| |||| |||||  |||||||||||    
T  24072590 ttttgggttgttaaggtgtttagggtg-ctttaagggtgcgtgtccttcgagttgagcatttt-ttcctatttgattgatgt 24072511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 8730605 - 8730711
Alignment:
Q  39 gtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgtt 138  Q
    ||||||||  ||||||||  |||||||||  || ||||||| ||||||||||| ||||||| |||||| ||||||||| |||||| || |||| ||||||    
T  8730605 gtggttgttgtgggtgatgtcttttggaggttgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagttttgagttgttaaggtgtt 8730704  T
Q  139 aagggtg 145  Q
     ||||||    
T  8730705 tagggtg 8730711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 8730780 - 8730826
Alignment:
Q  214 gtcttactttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    ||||||||| ||||||| ||||||||||||||||| |||| ||||||    
T  8730780 gtcttacttattgtgtgctggattctggtgggccgattacttttgct 8730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 26046359 - 26046262
Alignment:
Q  53 tgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggtttt--gggtggttatggtgttaagggtgttt 148  Q
    ||||| |||||||||||||||||||||| |||||||| | |||||  || |||  ||||||||| |||||  ||||| ||  |||||| |||||||||    
T  26046359 tgatttcttttggagactgcctctgttactcgggtccttgttcgtcttcactagctcttgtttgtgtttttggggtgttttaggtgtttagggtgttt 26046262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 23426118 - 23426195
Alignment:
Q  49 tgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggt 126  Q
    |||| |||||||||  ||| | ||||||| ||||| |||||||||  ||||||||||| ||||| ||| |||||||||    
T  23426118 tgggggattcctttaagaggccgcctctggtattcaggtccatatatgttgtcgctacctcttgcttgagttttgggt 23426195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 19598321 - 19598552
Alignment:
Q  29 tgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtgg 128  Q
    |||| |||||| ||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||    
T  19598321 tgctattgtggcggttgttgtgggtgattccttttggagaccgcctctgttattcaggtccatattcgttgtcgctacatctagtttgagttttgggtgg 19598420  T
Q  129 ttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgcagtcttactttttgtg 228  Q
     || |||||| ||||||||||| ||||||  ||||||| ||||||||| |||  | | || || |||||||| || ||||||||||||||||||||||||    
T  19598421 ctaaggtgtttagggtgtttttaagggtgcatgtccttcgagctgagcatttattcctttttttattgatgtttgcaccaccgcagtcttactttttgtg 19598520  T
Q  229 tgttggattctggtgggccggttacctttgct 260  Q
    || |||| ||||||||||||||||| ||||||    
T  19598521 tgctggactctggtgggccggttacttttgct 19598552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 50589630 - 50589437
Alignment:
Q  19 aggaggtggatgcttttgtggtggtt-gtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgg 117  Q
    |||||||||||||||| |||| |||| ||  ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| | ||||| |||     
T  50589630 aggaggtggatgcttt-gtgggggtttgttgtgggtgattccttttggaggccgcctctgttattcgggtccatattccttgtcgctgcctcttgcttga 50589532  T
Q  118 gttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
    ||||||||| || |  ||||| | |||| ||||||||||||||||| ||  |||| ||| ||||||||||| || |||||||| || |||||||||    
T  50589531 gttttgggttgtgaatgtgtttatggtggttttgagggtgtgtgtcattctagcttagc-ttttgttccttttttattgatgtttgcaccaccgca 50589437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 38545148 - 38544969
Alignment:
Q  32 ttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggtta 131  Q
    |||||||||||||||  ||||||||| |||||||||| || ||||||||||  | ||||| ||| |  ||||||  ||||||||| ||||||||| ||||    
T  38545148 ttttgtggtggttgttgtgggtgatttcttttggagaatgtctctgttattacgttccatcttcatcatcgctagctcttgtttgagttttgggtcgtta 38545049  T
Q  132 tggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
     | |||| ||||||  ||||||||||||||||||| ||||||||| |||| |||||| ||||||||||| || |||||||||    
T  38545048 agatgtttagggtg-ctttgagggtgtgtgtccttcgagctgagcatttt-ttcctttttgattgatgtttgcaccaccgca 38544969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 17033263 - 17033493
Alignment:
Q  40 tggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgtta 139  Q
    |||||||  ||||||||| ||||||||| | |||| ||||||| |||||||| ||||| |||| |   | ||||||| |||||||||  ||  |||||||    
T  17033263 tggttgttgtgggtgatttcttttggaggcggcctatgttatttgggtccattttcgtcgtcgttggctattgtttgagttttgggttattgaggtgtta 17033362  T
Q  140 -agggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca-------------gtcttacttttt 225  Q
     | |||||||| |||||||| ||||||| ||||||||| |||| |||||| ||||||||||| || |||||| ||             ||||||||| ||    
T  17033363 tatggtgtttt-gagggtgtatgtccttcgagctgagcatttt-ttcctttttgattgatgtttgcaccaccacaaatcttgtcgtttgtcttacttatt 17033460  T
Q  226 gtgtgttggattctggtgggccggttacctttg 258  Q
    ||||| |||||||||||||||||||||| ||||    
T  17033461 gtgtgctggattctggtgggccggttacttttg 17033493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 4651573 - 4651638
Alignment:
Q  147 ttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
    |||||||||||||||||||| |||||||| ||||| |||||| | ||||||||| ||  ||||||||    
T  4651573 ttttgagggtgtgtgtccttcgagctgagattttt-ttccttttcgattgatgtttgctccaccgca 4651638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 15126815 - 15126575
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    ||||||| | ||||||| ||| ||||||  |||| |||| ||||| |||||   | ||||||||| ||||| |||||||||||||||| ||||||||| |    
T  15126815 aggaggtaggtgcttttctggcggttgttgtgggagatttcttttagagaccatccctgttattcaggtccttattcgttgtcgctacctcttgtttgag 15126716  T
Q  119 ttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgcagtctt 218  Q
    |||||| ||| |   ||||| |||||| ||||||||||| ||||||||||| ||||||  |||||||||| || ||||| || || ||||||||| ||||    
T  15126715 ttttggatggctcaagtgtttagggtggttttgagggtgcgtgtcctttgaactgagc-atttgttccttttttattgacgtttgcaccaccgcaatctt 15126617  T
Q  219 actttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    |||||||||||| | |||||||||||| | ||||| ||||||    
T  15126616 actttttgtgtgctagattctggtgggtcagttacttttgct 15126575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 2062569 - 2062749
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||||  ||||||||| |||||||||||||||| |||| ||||| ||| ||||| |    
T  2062569 aggaggtgggtgcttttgtggtggttgttgtgggtgattccttttggaggttgcctctgtgattcgggtccatattcattgttgctacctctcgtttgag 2062668  T
Q  119 ttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgt 200  Q
    |||||||| | |  |||||| | |||| ||| ||||||| |||||||| ||| |||||  |||||||||| |||||||||||    
T  2062669 ttttgggttgcttaggtgtttatggtggtttagagggtgcgtgtccttcgagttgagc-atttgttcctttttgattgatgt 2062749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 22885558 - 22885364
Alignment:
Q  18 aaggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtcca-tattcgttgtcgctacttcttgtttg 116  Q
    |||||||||| || |||||||||||||||| ||||||||||||||| ||| |  ||||||||||||||||||| | ||||| |||||||| |||||||||    
T  22885558 aaggaggtgggtgtttttgtggtggttgtggtgggtgattcctttttgaggccacctctgttattcgggtccatttttcgtcgtcgctacctcttgtttg 22885459  T
Q  117 ggttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
     |||| |||| | || |||||| | ||||  || ||||||| |||||||| ||| ||||| | || |||||| ||||||||||| || |||| ||||    
T  22885458 agtttcgggttgctaaggtgtttaaggtg-attggagggtgcgtgtccttcgagttgagcgtctt-ttcctttttgattgatgtttgcaccatcgca 22885364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 16959716 - 16959876
Alignment:
Q  49 tgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgttaagggtgttt 148  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||| ||  |||||||||  | |  ||||| |||||| ||    
T  16959716 tgggtgattccttttggaggccgcctctgttattcgggtccatattccttgtcgctacctcttg-ttaagttttgggt--tgaaagtgtttagggtggtt 16959812  T
Q  149 ttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
    | || |||||||||| ||  |||||||| ||||||||||| ||||||||| | || |||||||||    
T  16959813 tcgaaggtgtgtgtcattctagctgagc-ttttgttcctttttgattgatatttgcaccaccgca 16959876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 25505302 - 25505196
Alignment:
Q  39 gtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgtt 138  Q
    ||||||||  ||||||||  |||||||||  || ||||||| ||||||||||| ||||||| |||||| ||||||||| |||||| || |||| ||||||    
T  25505302 gtggttgttgtgggtgatgtcttttggaggttgtctctgtttttcgggtccattttcgttgacgctacctcttgtttgagttttgagttgttaaggtgtt 25505203  T
Q  139 aagggtg 145  Q
     ||||||    
T  25505202 tagggtg 25505196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 29486831 - 29486893
Alignment:
Q  54 gattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttg 116  Q
    |||||||||  ||| ||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  29486831 gattcctttcagaggctgcctctggtattcaggtccatattcgttgtcgctacctcttgtttg 29486893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 4471785 - 4471833
Alignment:
Q  212 cagtcttactttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  4471785 cagtcttacttattgtgtgatggattctggtgggccggttacttttgct 4471833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 22885342 - 22885304
Alignment:
Q  222 ttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  22885342 ttttgtgtgttggatgctggtgggccggttacttttgct 22885304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 25505127 - 25505081
Alignment:
Q  214 gtcttactttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    ||||||||| ||||||| ||||||||||||||||| |||| ||||||    
T  25505127 gtcttacttattgtgtgctggattctggtgggccgattacttttgct 25505081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 25505201 - 25505154
Alignment:
Q  152 agggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgt 200  Q
    |||||| |||||||| |||||||||||||| |||||| |||||||||||    
T  25505201 agggtgagtgtccttagagctgagcttttt-ttcctttttgattgatgt 25505154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 6238 - 6475
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    |||||| || |||||||||||  |||||   |||||||||||||||| ||| ||||||| |||||||| || |||||||||||| ||| ||||||||| |    
T  6238 aggaggagggtgcttttgtggcagttgttgagggtgattccttttggtgaccgcctctgctattcgggaccttattcgttgtcgatacctcttgtttgag 6337  T
Q  119 ttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgcagtctt 218  Q
    |||||||  | || | | || ||||| || ||||||  |||||||||||||| |||||   |||||  || || |||||||| || ||||||||||||||    
T  6338 ttttgggatgctaggatatttagggt-ttgttgagg--gtgtgtcctttgagttgagc-acttgtttgttttttattgatgtttgtaccaccgcagtctt 6433  T
Q  219 actttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    ||||||||||||||| |||||| ||||| |||||| ||||||    
T  6434 actttttgtgtgttgcattctgatgggcaggttacttttgct 6475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 13098972 - 13098735
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    |||||| || ||||||||||| ||||||   |||||||||||||||| ||  ||||||| |||||||| || |||||||||||| ||| ||||||||| |    
T  13098972 aggaggagggtgcttttgtggcggttgttgagggtgattccttttggtgatcgcctctgctattcgggaccttattcgttgtcgatacctcttgtttgag 13098873  T
Q  119 ttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgcagtctt 218  Q
    |||||||    || | | || ||||| || ||||||||||||  |||| |||||||||  || |||| || || |||||||| || ||||||||||||||    
T  13098872 ttttgggatactaggatatttagggt-ttgttgagggtgtgt--ccttcgagctgagcactt-gttcgttttttattgatgtttgtaccaccgcagtctt 13098777  T
Q  219 actttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    |||||||||||| || |||||| |||||||||||| ||||||    
T  13098776 actttttgtgtgctgcattctgatgggccggttacttttgct 13098735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 12793802 - 12793949
Alignment:
Q  49 tgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgttaagggtgttt 148  Q
    ||||||||| || ||||||   |||| ||||||||||||||||| |||||||| |||  ||||||||  ||| ||||| |||| ||||||  ||||| ||    
T  12793802 tgggtgatttctattggaggtcgcctttgttattcgggtccatactcgttgtccctagctcttgtttaagttgtgggttgttaaggtgttttgggtg-tt 12793900  T
Q  149 ttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgat 198  Q
    |||||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  12793901 ttgagggtgtgtgtccttcgagttgagcttttt-ttcctttttgattgat 12793949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 26535128 - 26535020
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    ||||||||| |  |||||||||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||  |||||||||   ||||||||| |    
T  26535128 aggaggtgggtttttttgtggtggttgttgtgggtgattccttgtggagaccgcctctgttattcgggtccatatctgttgtcgcttactcttgtttgtg 26535029  T
Q  119 ttttgggtg 127  Q
    ||| |||||    
T  26535028 tttagggtg 26535020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 15943696 - 15943769
Alignment:
Q  32 ttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgcta 105  Q
    |||| ||||||||||  |||||| |||||||||||| ||||||||| ||||| |||| ||||||||||||||||    
T  15943696 ttttatggtggttgttgtgggtgtttccttttggaggctgcctctggtattcaggtcgatattcgttgtcgcta 15943769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 9223697 - 9223798
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    |||||||||  | ||||| |||||||||  ||||||||||||||||||| |    ||| |||||||||| ||||||||||||||||   |||||||||||    
T  9223697 aggaggtgggcgtttttgaggtggttgttatgggtgattccttttggaggccatttcttttattcgggt-catattcgttgtcgctgtctcttgtttggg 9223795  T
Q  119 ttt 121  Q
    |||    
T  9223796 ttt 9223798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 26216202 - 26216151
Alignment:
Q  147 ttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgt 200  Q
    |||||||||||||||| |||||||||||||||||  |||||| |||||||||||    
T  26216202 ttttgagggtgtgtgttctttgagctgagctttt--ttcctttttgattgatgt 26216151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 9223905 - 9223943
Alignment:
Q  214 gtcttactttttgtgtgttggattctggtgggccggtta 252  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  9223905 gtcttactttttgtgtgatggatgctggtgggccggtta 9223943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 21264852 - 21264890
Alignment:
Q  214 gtcttactttttgtgtgttggattctggtgggccggtta 252  Q
    |||||||||||||||||||| || |||||||||||||||    
T  21264852 gtcttactttttgtgtgttgtatgctggtgggccggtta 21264890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 1427 - 1248
Alignment:
Q  32 ttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggtta 131  Q
    |||||||||||||||  ||||||||| |||||||||| || ||||||||||  | ||||| ||| |  ||||||  ||||||||| ||||||||| ||||    
T  1427 ttttgtggtggttgttgtgggtgatttcttttggagaatgtctctgttattacgttccatcttcatcatcgctagctcttgtttgagttttgggtcgtta 1328  T
Q  132 tggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
     | |||| ||||||  ||||||||||||||||||| ||||||||| |||| |||||| ||||||||||| || |||||||||    
T  1327 agatgtttagggtg-ctttgagggtgtgtgtccttcgagctgagcatttt-ttcctttttgattgatgtttgcaccaccgca 1248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 47457269 - 47457189
Alignment:
Q  178 ttttgttccttcttgattgatgtatgaaccaccgcagtcttactttttgtgtgttggattctggtgggccggttacctttg 258  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  47457269 ttttgttcctttttgattgatgtatgaaccaccgcagtcttactttttgtgtgctggattctggtgggccggatacttttg 47457189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 9106821 - 9107009
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    ||||||||| || ||| ||||| ||||||| || ||||| ||||| ||| | ||||||||||||| ||||||| ||||| |||||||  ||||||||| |    
T  9106821 aggaggtgggtgttttagtggtagttgtgtagg-tgatttcttttagaggccgcctctgttattcaggtccattttcgtcgtcgctagctcttgtttgag 9106919  T
Q  119 ttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccacc 210  Q
    |||| ||  |||| |||||| ||||||  |||||||||| ||||||||  || ||||  |||| |||||| ||||||||||| || ||||||    
T  9106920 ttttagggtgttaaggtgtttagggtg-ctttgagggtgggtgtccttccagatgagaatttt-ttcctttttgattgatgtttgcaccacc 9107009  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 12480557 - 12480665
Alignment:
Q  19 aggaggtggatgcttttgtggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttggg 118  Q
    ||||||||| || |||||||||||||||  || |||||| ||||||||| | |||| |||||||||||||||||| |||||| |||   ||||||||| |    
T  12480557 aggaggtgggtgtttttgtggtggttgttgtgagtgatttcttttggaggccgcctttgttattcgggtccatatccgttgttgcttactcttgtttgtg 12480656  T
Q  119 ttttgggtg 127  Q
    ||| |||||    
T  12480657 tttagggtg 12480665  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 46133663 - 46133575
Alignment:
Q  39 gtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtg 127  Q
    ||||||||  ||||||||| || |||| ||| |||||| ||||||||||||||| ||||||||||||  ||| ||||| |||| |||||    
T  46133663 gtggttgttatgggtgatttctattggtgaccgcctctattattcgggtccatactcgttgtcgctagctctggtttgagtttagggtg 46133575  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 29647556 - 29647642
Alignment:
Q  52 gtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgtt 138  Q
    |||||| ||||||||| | |||||||||||||  || |||||||||||||||||  | | ||||| |||||| || |||| ||||||    
T  29647556 gtgatttcttttggaggccgcctctgttattcacgttcatattcgttgtcgctaactttggtttgagttttgagttgttaaggtgtt 29647642  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 38485342 - 38485407
Alignment:
Q  147 ttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
    |||| ||||||||||||||| |||||||||||||| |||| | ||||||||||| ||  ||||||||    
T  38485342 ttttaagggtgtgtgtccttcgagctgagcttttt-ttcccttttgattgatgtttgctccaccgca 38485407  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 1653291 - 1653149
Alignment:
Q  38 ggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgt 137  Q
    |||||||||  ||| ||||| || ||||||  ||||||||||||||||||||||| ||||||||||||  ||||||||| ||||| ||| ||||||||||    
T  1653291 ggtggttgttgtggatgatttctattggaggttgcctctgttattcgggtccatactcgttgtcgctagctcttgtttgagttttaggttgttatggtgt 1653192  T
Q  138 taagggtgtttttgagggtgtgtgtcctttgagctgagcttttt 181  Q
    | || ||| |||||||||||| |||| ||  |||||||||||||    
T  1653191 ttagagtg-ttttgagggtgtctgtcattcaagctgagcttttt 1653149  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 47945521 - 47945614
Alignment:
Q  160 tgtcctttgagctgagctttttgttccttcttgattgatgtat-gaaccaccgcagtcttactttttgtgtgttggattctggtgggccggttac 253  Q
    ||||||| ||||||||| ||| ||||||| ||||||||| | | |||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  47945521 tgtccttcgagctgagcattt-gttcctttttgattgatattttgaaccaccgcagccttactttttgtgtgctggattctggtgtgccggttac 47945614  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 30935756 - 30935647
Alignment:
Q  78 ttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgagctgagct 177  Q
    ||||||||||||||| | |||||| |||  | || |||| ||||| ||| |||| |||||| |||||||||| || ||||||||||||| ||||||||||    
T  30935756 ttattcgggtccatacttgttgtcactagcttttatttgagttttaggttgttaaggtgtttagggtgtttt-gaaggtgtgtgtccttcgagctgagct 30935658  T
Q  178 ttttgttcctt 188  Q
    | || ||||||    
T  30935657 tctttttcctt 30935647  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 25594883 - 25594752
Alignment:
Q  71 gcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgttaagggtgtttttgagggtgtgtgtcctttgag 170  Q
    |||||| |||||||||||||| ||| |||||| |  || ||||||| |||||||||        |||| |||||||||| ||||||| ||||||||||||    
T  25594883 gcctcttttattcgggtccattttcattgtcgatggttgttgtttgagttttgggt--------tgtttagggtgtttt-gagggtgcgtgtcctttgag 25594793  T
Q  171 ctgagctttttgttccttcttgattgatgtatgaaccaccgc 212  Q
    |||| | |||| |||||| ||||||||||| || ||||||||    
T  25594792 ctgaacatttt-ttcctttttgattgatgtttgcaccaccgc 25594752  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 200
Target Start/End: Complemental strand, 30236502 - 30236342
Alignment:
Q  38 ggtggttgtgttgggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgt 137  Q
    |||||||||  ||||||||| || |||||| | ||||||||| ||||||| |||| ||||||||||||  |||| |||| ||| ||||| || | |||||    
T  30236502 ggtggttgtcgtgggtgatttctattggaggccgcctctgtttttcgggttcatactcgttgtcgctagctcttatttgagttgtgggttgtcaaggtgt 30236403  T
Q  138 taagggtgtttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgt 200  Q
    | |||||  |||||||||||||||||||| |||||||| | ||| |||||| |||||||||||    
T  30236402 ttagggt-attttgagggtgtgtgtccttcgagctgag-tgttttttcctttttgattgatgt 30236342  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 10552053 - 10552119
Alignment:
Q  147 ttttgagggtgtgtgtcctttgagctgagctttttgttccttcttgattgatgtatgaaccaccgca 213  Q
    |||||||||||||||||||| |||||| ||||||| |||||| ||||||||||| ||  ||||||||    
T  10552053 ttttgagggtgtgtgtccttcgagctgcgcttttttttcctttttgattgatgtttgctccaccgca 10552119  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 17657402 - 17657337
Alignment:
Q  51 ggtgattccttttggagactgcctctgttattcgggtccatattcgttgtcgctacttcttgtttg 116  Q
    |||||||  |||||||| ||||||||||||||||||||| | || |||||| |||  |||||||||    
T  17657402 ggtgatttgttttggaggctgcctctgttattcgggtccttgtttgttgtcactagctcttgtttg 17657337  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 17720921 - 17720876
Alignment:
Q  215 tcttactttttgtgtgttggattctggtgggccggttacctttgct 260  Q
    |||||| ||||||||| ||||||||||||||||| |||| ||||||    
T  17720921 tcttacattttgtgtgctggattctggtgggccgattacttttgct 17720876  T

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Target: scaffold0062 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 46798 - 46865
Alignment:
Q  71 gcctctgttattcgggtccatattcgttgtcgctacttcttgtttgggttttgggtggttatggtgtt 138  Q
    ||||||||||||||||||||||| ||| |||||||  ||||||||| ||||||| | |||| ||||||    
T  46798 gcctctgttattcgggtccatatccgtcgtcgctagctcttgtttgagttttggattgttaaggtgtt 46865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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